Variant report

Variant	rs943741
Chromosome Location	chr9:16551131-16551132
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10121584	0.81[CEU][hapmap]
rs10962519	0.82[CEU][hapmap]
rs943739	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs943740	0.96[CEU][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs943742	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16525000-16551400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:16528000-16553200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:16528800-16551200	Weak transcription	Fetal Intestine Large	intestine
4	chr9:16531400-16551200	Weak transcription	Fetal Stomach	stomach
5	chr9:16536000-16552200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:16536200-16551600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:16541200-16552000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:16541400-16551200	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:16542000-16551200	Weak transcription	Adipose Nuclei	Adipose
10	chr9:16542600-16551200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:16542600-16564000	Weak transcription	HUVEC	blood vessel
12	chr9:16542800-16551200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr9:16542800-16554800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:16543800-16554600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:16543800-16567000	Weak transcription	HSMMtube	muscle
16	chr9:16544000-16559600	Weak transcription	Small Intestine	intestine
17	chr9:16545000-16554000	Weak transcription	Fetal Kidney	kidney
18	chr9:16545600-16552400	Weak transcription	Aorta	Aorta
19	chr9:16545800-16551800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr9:16545800-16552000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:16546000-16554600	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr9:16546000-16559600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr9:16546000-16559800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr9:16546000-16568400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr9:16546400-16551200	Weak transcription	Colon Smooth Muscle	Colon
26	chr9:16546800-16552800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:16548200-16551400	Weak transcription	NHLF	lung
28	chr9:16548200-16552400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:16550000-16556400	Weak transcription	Fetal Intestine Small	intestine
30	chr9:16550200-16554000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr9:16550400-16552800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr9:16550600-16551800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr9:16550600-16552600	Strong transcription	HSMM	muscle
34	chr9:16550600-16552800	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr9:16550600-16552800	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr9:16550600-16552800	Strong transcription	Stomach Smooth Muscle	stomach
37	chr9:16550600-16553400	Strong transcription	NHDF-Ad	bronchial
38	chr9:16550800-16551600	Enhancers	Fetal Lung	lung
39	chr9:16550800-16552600	Strong transcription	Fetal Muscle Trunk	muscle
40	chr9:16550800-16552800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:16550800-16553000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:16550800-16553000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr9:16550800-16553200	Strong transcription	Osteobl	bone
44	chr9:16550800-16559800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr9:16551000-16552000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr9:16551000-16552400	Strong transcription	Ovary	ovary
47	chr9:16551000-16552600	Strong transcription	NH-A	brain
48	chr9:16551000-16552800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links