Variant report

Variant	rs943749
Chromosome Location	chr9:16473032-16473033
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10962435	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962436	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1927633	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs35329536	0.92[ASN][1000 genomes]
rs59270230	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs59942959	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs62540630	0.93[EUR][1000 genomes]
rs62540632	0.93[EUR][1000 genomes]
rs62540633	0.91[EUR][1000 genomes]
rs7043024	0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs729330	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7868285	1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.84[ASN][1000 genomes]
rs7869173	0.93[EUR][1000 genomes]
rs943750	1.00[CEU][hapmap];0.85[TSI][hapmap];0.89[EUR][1000 genomes]
rs943751	0.84[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16457800-16493400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:16459600-16482400	Weak transcription	A549	lung
3	chr9:16459600-16499800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:16459600-16500000	Weak transcription	NHLF	lung
5	chr9:16460800-16485400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:16462000-16476400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:16462200-16474000	Weak transcription	Fetal Lung	lung
8	chr9:16463200-16478000	Weak transcription	Ovary	ovary
9	chr9:16463200-16483800	Weak transcription	Fetal Stomach	stomach
10	chr9:16468400-16473400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:16469200-16476000	Weak transcription	Osteobl	bone
12	chr9:16469800-16475600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:16471000-16504600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:16471200-16477800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:16472000-16473400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:16472200-16476000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr9:16472400-16473200	Strong transcription	HSMM	muscle
18	chr9:16472800-16476000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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