Variant report

Variant	rs9441862
Chromosome Location	chr1:221966447-221966448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11806474	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17010748	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3003887	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4342858	1.00[AMR][1000 genomes]
rs61277365	1.00[AMR][1000 genomes]
rs6659975	1.00[AMR][1000 genomes]
rs6694732	1.00[AMR][1000 genomes]
rs6698802	1.00[AMR][1000 genomes]
rs7551559	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9441866	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9441953	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9441957	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469786	chr1:221855871-222040335	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482867	chr1:221855871-222040335	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1002463	chr1:221863355-222095773	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv535302	chr1:221863355-222095773	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv873201	chr1:221956626-222007535	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221960400-221970000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:221960800-221966800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:221963800-221967200	Weak transcription	HMEC	breast
4	chr1:221964600-221969200	Enhancers	Primary B cells from peripheral blood	blood
5	chr1:221965200-221967200	Enhancers	Primary B cells from cord blood	blood
6	chr1:221966000-221966600	Enhancers	GM12878-XiMat	blood
7	chr1:221966400-221967000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:221966400-221967000	Enhancers	Pancreas	Pancrea
9	chr1:221966400-221967000	Enhancers	Spleen	Spleen
10	chr1:221966400-221967800	Enhancers	Primary T cells fromperipheralblood	blood
11	chr1:221966400-221968200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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