Variant report

Variant	rs9442944
Chromosome Location	chr6:74401568-74401569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr6:74401276-74401568	MCF10A-Er-Src	breast:	n/a	chr6:74401399-74401410
2	FOSL2	chr6:74401198-74401658	SK-N-SH	brain:	n/a	n/a
3	FOS	chr6:74401302-74401573	MCF10A-Er-Src	breast:	n/a	chr6:74401399-74401410
4	FOS	chr6:74401275-74401589	MCF10A-Er-Src	breast:	n/a	chr6:74401399-74401410

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:74399537..74401947-chr6:74407305..74409103,2	MCF-7	breast:

Variant related genes	Relation type
CD109	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3846752	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3913452	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6921122	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7773503	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9446976	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9446980	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
3	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
6	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
7	nsv1029927	chr6:74300496-74424355	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv1027691	chr6:74302980-74417450	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74389000-74404400	Weak transcription	Fetal Heart	heart
2	chr6:74393000-74404400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:74398400-74404400	Weak transcription	Aorta	Aorta
4	chr6:74398600-74404200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:74400400-74402800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:74400600-74401800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:74400600-74401800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:74400800-74402000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:74401000-74401600	Enhancers	Osteobl	bone
10	chr6:74401000-74401800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:74401000-74401800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:74401000-74401800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:74401000-74401800	Enhancers	NHEK	skin
14	chr6:74401000-74402000	Enhancers	HMEC	breast
15	chr6:74401000-74404200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:74401200-74401600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:74401200-74401600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:74401200-74401600	Enhancers	NHDF-Ad	bronchial
19	chr6:74401200-74401600	Enhancers	NHLF	lung
20	chr6:74401200-74401800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:74401200-74401800	Enhancers	A549	lung
22	chr6:74401200-74402000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:74401200-74403800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:74401400-74401800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:74401400-74403600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr6:74401400-74404200	Weak transcription	NH-A	brain
27	chr6:74401400-74404400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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