Variant report

Variant	rs9443199
Chromosome Location	chr6:76618235-76618236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:76617686..76620159-chr6:76629560..76631488,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10081009	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16886870	1.00[AMR][1000 genomes]
rs16886925	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61564746	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443190	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443193	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447547	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447553	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447557	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447566	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447568	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447572	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021090	chr6:76306100-76759397	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv538318	chr6:76306100-76759397	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1032961	chr6:76343575-76788852	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv932201	chr6:76365548-77219650	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv1028340	chr6:76410921-76960225	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv538319	chr6:76410921-76960225	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv933727	chr6:76618124-76618721	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76573000-76624000	Weak transcription	Placenta	Placenta
2	chr6:76574400-76632600	Weak transcription	Spleen	Spleen
3	chr6:76577200-76624600	Weak transcription	Fetal Kidney	kidney
4	chr6:76583800-76624600	Weak transcription	Pancreas	Pancrea
5	chr6:76584200-76629400	Weak transcription	Ovary	ovary
6	chr6:76584400-76623800	Weak transcription	Lung	lung
7	chr6:76584800-76644600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:76585800-76624000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr6:76585800-76624400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:76585800-76626800	Weak transcription	Left Ventricle	heart
11	chr6:76585800-76644600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:76586000-76627600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:76586200-76624400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:76587600-76623800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:76592600-76624400	Weak transcription	Osteobl	bone
16	chr6:76592800-76631800	Weak transcription	NHEK	skin
17	chr6:76594600-76632200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:76597200-76624600	Weak transcription	Brain Angular Gyrus	brain
19	chr6:76600200-76631800	Weak transcription	HMEC	breast
20	chr6:76600400-76624600	Weak transcription	Brain Substantia Nigra	brain
21	chr6:76602400-76619200	Weak transcription	HUVEC	blood vessel
22	chr6:76602600-76624400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:76603600-76619000	Weak transcription	Liver	Liver
24	chr6:76604000-76624400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr6:76604400-76623800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:76604400-76627000	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:76604600-76623800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:76606200-76623600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:76606600-76623400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:76606600-76623800	Weak transcription	Adipose Nuclei	Adipose
31	chr6:76606600-76628800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:76606600-76629200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:76606600-76632000	Weak transcription	NHDF-Ad	bronchial
34	chr6:76606800-76619000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:76606800-76619200	Weak transcription	Brain Anterior Caudate	brain
36	chr6:76606800-76624000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr6:76606800-76632000	Weak transcription	HSMM	muscle
38	chr6:76607000-76623800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr6:76608600-76622600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:76608600-76624400	Weak transcription	Esophagus	oesophagus
41	chr6:76608600-76628000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr6:76608600-76629400	Weak transcription	Aorta	Aorta
43	chr6:76611600-76624200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:76615200-76623600	Weak transcription	Fetal Intestine Large	intestine
45	chr6:76615200-76628400	Weak transcription	Fetal Intestine Small	intestine
46	chr6:76615400-76622600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:76615600-76623800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:76615800-76624400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:76615800-76630200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:76616000-76626800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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