Variant report

Variant	rs9444506
Chromosome Location	chr6:88183546-88183547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:88180469..88184304-chr6:88409511..88413377,7	K562	blood:
2	chr6:88182819..88184854-chr6:88208059..88210362,2	K562	blood:
3	chr6:88109062..88110726-chr6:88183109..88185795,2	MCF-7	breast:
4	chr6:88181828..88184241-chr6:88195546..88199503,4	MCF-7	breast:
5	chr6:88181757..88184109-chr6:88228159..88230300,2	MCF-7	breast:
6	chr6:88116849..88119599-chr6:88181543..88183591,3	MCF-7	breast:
7	chr6:88118527..88120089-chr6:88183181..88184775,2	MCF-7	breast:
8	chr6:88181710..88183852-chr6:88298759..88301128,2	K562	blood:
9	chr6:88180469..88184304-chr6:88409409..88413377,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000206715	Chromatin interaction
ENSG00000146282	Chromatin interaction
ENSG00000272514	Chromatin interaction
ENSG00000135334	Chromatin interaction
ENSG00000213204	Chromatin interaction
ENSG00000135336	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10046347	1.00[AFR][1000 genomes]
rs9444500	1.00[AFR][1000 genomes]
rs9444523	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018155	chr6:88049729-88272862	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830722	chr6:88054186-88223625	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1031961	chr6:88110401-88367006	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1031460	chr6:88153079-88410050	Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1026482	chr6:88164934-88409728	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv1027706	chr6:88168987-88409728	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:88181800-88183600	Active TSS	A549	lung
2	chr6:88181800-88183800	Active TSS	Psoas Muscle	Psoas
3	chr6:88182000-88183600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:88182000-88183600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:88182000-88183600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:88182000-88183600	Active TSS	Fetal Intestine Large	intestine
7	chr6:88182000-88183600	Active TSS	Fetal Muscle Trunk	muscle
8	chr6:88182000-88183600	Active TSS	Gastric	stomach
9	chr6:88182000-88183600	Active TSS	Lung	lung
10	chr6:88182000-88183600	Active TSS	Stomach Mucosa	stomach
11	chr6:88182000-88183600	Active TSS	HSMM	muscle
12	chr6:88182000-88183600	Active TSS	HSMMtube	muscle
13	chr6:88182000-88183800	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr6:88182000-88183800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:88182000-88183800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:88182000-88183800	Active TSS	Muscle Satellite Cultured Cells	--
17	chr6:88182000-88183800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:88182000-88183800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:88182000-88183800	Active TSS	Aorta	Aorta
20	chr6:88182000-88184000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:88182000-88184000	Active TSS	HMEC	breast
22	chr6:88182000-88184000	Active TSS	NHDF-Ad	bronchial
23	chr6:88182000-88184200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr6:88182000-88184400	Active TSS	Right Atrium	heart
25	chr6:88182200-88183600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr6:88182200-88183600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:88182200-88183600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:88182200-88183600	Active TSS	Left Ventricle	heart
29	chr6:88182200-88183800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:88182200-88183800	Active TSS	Esophagus	oesophagus
31	chr6:88182200-88183800	Active TSS	Small Intestine	intestine
32	chr6:88182400-88183800	Active TSS	Fetal Kidney	kidney
33	chr6:88183000-88183600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:88183000-88183800	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr6:88183000-88184000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:88183000-88184200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:88183200-88183600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:88183200-88183600	Flanking Active TSS	H9 Cell Line	embryonic stem cell
39	chr6:88183200-88183600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr6:88183200-88183600	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr6:88183200-88183600	Flanking Active TSS	Primary B cells from peripheral blood	blood
42	chr6:88183200-88183600	Flanking Active TSS	Primary T cells from cord blood	blood
43	chr6:88183200-88183600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
44	chr6:88183200-88183600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:88183200-88183600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr6:88183200-88183600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:88183200-88183600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr6:88183200-88183600	Flanking Active TSS	Liver	Liver
49	chr6:88183200-88183600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:88183200-88183600	Flanking Active TSS	Brain Substantia Nigra	brain

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