Variant report

Variant	rs9444881
Chromosome Location	chr6:92185991-92185992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12332894	1.00[AFR][1000 genomes]
rs9444873	1.00[AFR][1000 genomes]
rs9444874	1.00[AFR][1000 genomes]
rs9444875	1.00[AFR][1000 genomes]
rs9451671	1.00[YRI][hapmap]
rs9451686	1.00[AFR][1000 genomes]
rs9451687	0.91[AFR][1000 genomes]
rs9451688	1.00[AFR][1000 genomes]
rs9451694	1.00[AFR][1000 genomes]
rs9451695	1.00[AFR][1000 genomes]
rs9451701	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1025913	chr6:92103872-92258396	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv538361	chr6:92103872-92258396	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1024381	chr6:92169962-92194575	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:92185400-92186000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:92185400-92186000	Enhancers	Duodenum Smooth Muscle	Duodenum
3	chr6:92185400-92186200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:92185400-92186200	Enhancers	Dnd41	blood
5	chr6:92185400-92186400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:92185400-92186400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr6:92185400-92186800	Enhancers	HUVEC	blood vessel
8	chr6:92185600-92186000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:92185600-92186000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:92185600-92186000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:92185600-92186000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:92185600-92186000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:92185600-92186000	Enhancers	Adipose Nuclei	Adipose
14	chr6:92185600-92186000	Flanking Active TSS	Brain Anterior Caudate	brain
15	chr6:92185600-92186000	Enhancers	Brain Cingulate Gyrus	brain
16	chr6:92185600-92186000	Enhancers	Fetal Muscle Leg	muscle
17	chr6:92185600-92186000	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr6:92185600-92186000	Flanking Active TSS	GM12878-XiMat	blood
19	chr6:92185600-92186200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:92185600-92186200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:92185600-92186200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:92185600-92186200	Enhancers	Brain Hippocampus Middle	brain
23	chr6:92185600-92186200	Enhancers	Stomach Mucosa	stomach
24	chr6:92185600-92186200	Enhancers	NH-A	brain
25	chr6:92185600-92186400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr6:92185600-92186400	Enhancers	Hela-S3	cervix
27	chr6:92185800-92186000	Enhancers	Aorta	Aorta
28	chr6:92185800-92186000	Enhancers	Brain Substantia Nigra	brain
29	chr6:92185800-92186000	Enhancers	HSMMtube	muscle
30	chr6:92185800-92186000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr6:92185800-92186200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:92185800-92186200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:92185800-92186200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:92185800-92186200	Enhancers	Colon Smooth Muscle	Colon
35	chr6:92185800-92186200	Enhancers	Small Intestine	intestine
36	chr6:92185800-92186200	Enhancers	NHEK	skin

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