Variant report

Variant	rs9446043
Chromosome Location	chr6:69271590-69271591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28821243	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61707092	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9294800	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446029	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446034	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454546	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454547	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9454573	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1020545	chr6:69119445-69310136	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv830680	chr6:69192214-69351103	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3343013	chr6:69269931-69271929	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69269800-69272400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:69270400-69271600	Weak transcription	Brain Germinal Matrix	brain
3	chr6:69270400-69272000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69270600-69271600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69271200-69272000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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