Variant report

Variant	rs9446720
Chromosome Location	chr6:73329275-73329276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73328381..73330856-chr6:73331571..73334005,2	MCF-7	breast:
2	chr6:73306231..73308470-chr6:73328760..73331273,2	K562	blood:
3	chr6:73121575..73122165-chr6:73329258..73330216,2	K562	blood:
4	chr6:73114115..73116045-chr6:73329072..73331095,2	K562	blood:

Variant related genes	Relation type
ENSG00000185760	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9446721	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73324600-73329400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:73326200-73329400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:73328200-73329400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:73328400-73329400	Enhancers	Primary T cells from cord blood	blood
5	chr6:73328400-73329600	Enhancers	Fetal Thymus	thymus
6	chr6:73328600-73329400	Enhancers	GM12878-XiMat	blood
7	chr6:73328800-73329600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr6:73328800-73329600	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr6:73328800-73329800	Enhancers	Fetal Heart	heart
10	chr6:73329000-73329400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr6:73329000-73329400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:73329000-73329600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr6:73329000-73329600	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:73329000-73329600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:73329000-73329600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr6:73329000-73329600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr6:73329000-73329600	Enhancers	Dnd41	blood
18	chr6:73329000-73329800	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr6:73329000-73329800	Enhancers	Fetal Brain Male	brain
20	chr6:73329200-73329400	Enhancers	Primary B cells from cord blood	blood
21	chr6:73329200-73329400	Enhancers	Stomach Smooth Muscle	stomach
22	chr6:73329200-73329600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
23	chr6:73329200-73329600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
24	chr6:73329200-73329600	Enhancers	Primary B cells from peripheral blood	blood
25	chr6:73329200-73329600	Enhancers	Primary hematopoietic stem cells	blood
26	chr6:73329200-73329600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:73329200-73329600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:73329200-73329600	Enhancers	Fetal Stomach	stomach
29	chr6:73329200-73329600	Enhancers	Psoas Muscle	Psoas
30	chr6:73329200-73329600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr6:73329200-73329600	Enhancers	Thymus	Thymus
32	chr6:73329200-73329600	Enhancers	NHLF	lung
33	chr6:73329200-73329800	Bivalent Enhancer	Fetal Lung	lung
34	chr6:73329200-73330400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:73329200-73331600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr6:73329200-73331600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr6:73329200-73333800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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