Variant report

Variant	rs9446773
Chromosome Location	chr6:73575277-73575278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2179954	1.00[CEU][hapmap]
rs2207264	1.00[CEU][hapmap]
rs2226135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2840791	1.00[CEU][hapmap]
rs2982748	1.00[CEU][hapmap]
rs2982749	1.00[CEU][hapmap]
rs7748934	1.00[CEU][hapmap]
rs867262	0.92[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs9293915	0.89[JPT][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs9360607	0.86[ASN][1000 genomes]
rs9442860	0.87[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs9442861	0.85[CHB][hapmap];0.89[JPT][hapmap];0.86[YRI][hapmap];0.96[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9446777	0.88[CHB][hapmap];0.88[GIH][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv470834	chr6:73546750-73596605	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73569600-73575600	Enhancers	HSMMtube	muscle
2	chr6:73570400-73576600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr6:73571000-73576200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73572000-73575400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:73572000-73590200	Weak transcription	GM12878-XiMat	blood
6	chr6:73572200-73576400	Enhancers	HSMM	muscle
7	chr6:73572400-73576000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:73572600-73583800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:73572800-73575400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:73573200-73575400	Weak transcription	Osteobl	bone
11	chr6:73573800-73576000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:73574000-73576000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:73574200-73576000	Weak transcription	Psoas Muscle	Psoas
14	chr6:73574600-73576000	Enhancers	HMEC	breast
15	chr6:73574800-73575600	Enhancers	Liver	Liver
16	chr6:73574800-73575800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:73574800-73575800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:73574800-73575800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr6:73574800-73576000	Enhancers	NHEK	skin
20	chr6:73575000-73576000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr6:73575000-73576200	Weak transcription	Aorta	Aorta
22	chr6:73575200-73575600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:73575200-73575600	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr6:73575200-73575800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:73575200-73575800	Enhancers	NHDF-Ad	bronchial
26	chr6:73575200-73576000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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