Variant report

Variant	rs9446783
Chromosome Location	chr6:73601106-73601107
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs7754230	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9442859	1.00[YRI][hapmap]
rs9442862	0.91[AFR][1000 genomes]
rs9442864	1.00[AFR][1000 genomes]
rs9442865	1.00[AFR][1000 genomes]
rs9442866	1.00[AFR][1000 genomes]
rs9442867	1.00[AFR][1000 genomes]
rs9442869	0.81[AFR][1000 genomes]
rs9446775	1.00[YRI][hapmap]
rs9446778	0.91[AFR][1000 genomes]
rs9446779	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886156	chr6:73578415-73603675	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73596200-73603800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73597200-73601600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:73597200-73606800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:73601000-73604000	Weak transcription	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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