Variant report

Variant	rs9447047
Chromosome Location	chr6:74550418-74550419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3005498	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3012557	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74526400-74565000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:74528600-74557000	Weak transcription	Primary T cells from cord blood	blood
3	chr6:74531200-74553400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:74534400-74580600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:74541000-74552800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:74542400-74566800	Weak transcription	HMEC	breast
7	chr6:74543600-74551400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:74543600-74553600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:74543800-74551400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:74544600-74551000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:74545000-74551000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:74545000-74551400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:74545000-74551400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:74545000-74551400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:74545000-74551400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:74545000-74551400	Weak transcription	NHDF-Ad	bronchial
17	chr6:74545000-74552200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:74550200-74551200	Active TSS	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links