Variant report

Variant	rs9447368
Chromosome Location	chr6:75639612-75639613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs9447317	1.00[AMR][1000 genomes]
rs9447326	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447396	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447403	1.00[AMR][1000 genomes]
rs9447405	1.00[AMR][1000 genomes]
rs9447406	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75635600-75639800	Weak transcription	NHDF-Ad	bronchial
2	chr6:75635600-75642000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:75636200-75642000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:75636800-75641800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:75637600-75640400	Weak transcription	NHLF	lung
6	chr6:75637600-75640600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:75638200-75640400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:75638200-75640800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:75639600-75641400	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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