Variant report

Variant	rs9447397
Chromosome Location	chr6:75696591-75696592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs6940885	1.00[AMR][1000 genomes]
rs7772354	0.86[AFR][1000 genomes]
rs9443149	1.00[AMR][1000 genomes]
rs9447385	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447401	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447418	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447425	1.00[AMR][1000 genomes]
rs9447426	1.00[AMR][1000 genomes]
rs9447428	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830696	chr6:75538316-75734609	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75695400-75697400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:75695600-75696800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:75695600-75697200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:75695600-75698000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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