Variant report

Variant	rs9448090
Chromosome Location	chr6:78169809-78169810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1110255	1.00[EUR][1000 genomes]
rs12181240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12333076	1.00[EUR][1000 genomes]
rs1419080	1.00[EUR][1000 genomes]
rs1419081	1.00[EUR][1000 genomes]
rs1557159	1.00[EUR][1000 genomes]
rs1777799	1.00[EUR][1000 genomes]
rs1777801	1.00[EUR][1000 genomes]
rs1974363	1.00[EUR][1000 genomes]
rs2153889	1.00[EUR][1000 genomes]
rs2746588	1.00[EUR][1000 genomes]
rs2746589	1.00[EUR][1000 genomes]
rs3934417	1.00[EUR][1000 genomes]
rs6453975	1.00[EUR][1000 genomes]
rs6453976	1.00[EUR][1000 genomes]
rs6904677	1.00[EUR][1000 genomes]
rs9341662	1.00[EUR][1000 genomes]
rs9352475	1.00[EUR][1000 genomes]
rs9443392	1.00[EUR][1000 genomes]
rs9443394	1.00[EUR][1000 genomes]
rs9443410	1.00[EUR][1000 genomes]
rs9443415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9443416	1.00[EUR][1000 genomes]
rs9443417	1.00[EUR][1000 genomes]
rs9448049	1.00[EUR][1000 genomes]
rs9448058	1.00[EUR][1000 genomes]
rs9448059	1.00[EUR][1000 genomes]
rs9448063	1.00[EUR][1000 genomes]
rs9448065	1.00[EUR][1000 genomes]
rs9448066	1.00[EUR][1000 genomes]
rs9448068	1.00[EUR][1000 genomes]
rs9448069	1.00[EUR][1000 genomes]
rs9448075	1.00[EUR][1000 genomes]
rs9448091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9448093	1.00[AMR][1000 genomes]
rs9448094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs947732	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1028259	chr6:78059491-78709871	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv538325	chr6:78059491-78709871	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2758062	chr6:78100020-78283042	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2759445	chr6:78100020-78283042	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78166400-78171000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:78166400-78171400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:78166600-78171800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:78167200-78170200	Flanking Active TSS	HUVEC	blood vessel
5	chr6:78167400-78171800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:78167600-78171600	Weak transcription	HMEC	breast
7	chr6:78168600-78170000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:78168600-78170600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:78169200-78171600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:78169400-78170200	Enhancers	Fetal Heart	heart
11	chr6:78169400-78171400	Active TSS	NH-A	brain
12	chr6:78169400-78172000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:78169400-78174600	Active TSS	Aorta	Aorta
14	chr6:78169600-78170000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:78169800-78170000	Enhancers	NHLF	lung
16	chr6:78169800-78170200	Enhancers	HUES48 Cell Line	embryonic stem cell

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