Variant report

Variant	rs944861
Chromosome Location	chr20:12703357-12703358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11697551	0.88[AFR][1000 genomes]
rs11698851	0.87[AFR][1000 genomes]
rs11699509	0.88[AFR][1000 genomes]
rs1413014	0.87[AFR][1000 genomes]
rs1413015	0.87[AFR][1000 genomes]
rs1413016	0.87[AFR][1000 genomes]
rs1930801	0.86[AFR][1000 genomes]
rs1930802	0.87[AFR][1000 genomes]
rs1930803	0.87[AFR][1000 genomes]
rs2210566	1.00[ASN][1000 genomes]
rs4814151	0.85[AFR][1000 genomes]
rs4814153	0.88[AFR][1000 genomes]
rs4814154	0.87[AFR][1000 genomes]
rs56146900	0.87[AFR][1000 genomes]
rs56664126	0.88[AFR][1000 genomes]
rs57481915	0.88[AFR][1000 genomes]
rs59036896	0.88[AFR][1000 genomes]
rs59645310	0.87[AFR][1000 genomes]
rs73897890	0.88[AFR][1000 genomes]
rs73897891	0.87[AFR][1000 genomes]
rs73897893	0.85[AFR][1000 genomes]
rs73897899	0.85[AFR][1000 genomes]
rs73897900	0.85[AFR][1000 genomes]
rs869210	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058919	chr20:11917331-12733316	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv544183	chr20:11917331-12733316	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv18943	chr20:12627634-12841804	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:12695600-12703400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:12702000-12703600	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr20:12702200-12703800	Enhancers	HMEC	breast
4	chr20:12703000-12703600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr20:12703200-12703600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr20:12703200-12707600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr20:12703200-12724200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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