Variant report

Variant	rs945124
Chromosome Location	chr10:96199770-96199771
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96198485..96200699-chr10:96202037..96204075,2	MCF-7	breast:
2	chr10:96162530..96165019-chr10:96199067..96201077,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1575936	1.00[AMR][1000 genomes]
rs6421327	0.90[AFR][1000 genomes]
rs7099395	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761616	chr10:95966768-96303701	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv831946	chr10:96055190-96226438	Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96188400-96213600	Weak transcription	Stomach Mucosa	stomach
2	chr10:96190800-96234600	Weak transcription	Osteobl	bone
3	chr10:96192000-96211400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:96198400-96202800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:96198400-96218200	Weak transcription	Aorta	Aorta
6	chr10:96199000-96199800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:96199200-96211200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:96199200-96215400	Weak transcription	Fetal Stomach	stomach
9	chr10:96199400-96200000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:96199400-96202200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:96199400-96202200	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:96199400-96202400	Weak transcription	HSMM	muscle
13	chr10:96199400-96202800	Weak transcription	Brain Angular Gyrus	brain
14	chr10:96199400-96202800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr10:96199400-96202800	Weak transcription	Brain Substantia Nigra	brain
16	chr10:96199400-96202800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:96199400-96202800	Weak transcription	Ovary	ovary
18	chr10:96199400-96203000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:96199400-96203400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr10:96199400-96204000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:96199400-96204000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:96199400-96207000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:96199400-96211200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr10:96199400-96211400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:96199400-96211400	Weak transcription	Psoas Muscle	Psoas
26	chr10:96199400-96212000	Weak transcription	Adipose Nuclei	Adipose
27	chr10:96199400-96215200	Weak transcription	Placenta	Placenta
28	chr10:96199400-96219600	Weak transcription	Pancreas	Pancrea
29	chr10:96199600-96199800	Weak transcription	Lung	lung
30	chr10:96199600-96200000	Weak transcription	Left Ventricle	heart
31	chr10:96199600-96201200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:96199600-96202800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links