Variant report

Variant	rs945197
Chromosome Location	chr6:119401270-119401271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
FAM184A	TF binding region
ENSG00000253194	Chromatin interaction
ENSG00000111875	Chromatin interaction
ENSG00000111877	Chromatin interaction
ENSG00000111879	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12527366	0.90[AMR][1000 genomes]
rs12530153	0.83[AMR][1000 genomes]
rs12665481	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4946393	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119400600-119401400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:119400600-119402800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:119400800-119401400	Enhancers	Fetal Lung	lung
4	chr6:119400800-119401400	Enhancers	HUVEC	blood vessel
5	chr6:119400800-119401600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:119401000-119401400	Bivalent/Poised TSS	NHDF-Ad	bronchial
7	chr6:119401200-119401400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:119401200-119401400	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr6:119401200-119401600	Enhancers	Brain Hippocampus Middle	brain
10	chr6:119401200-119401800	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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