Variant report

Variant	rs945364
Chromosome Location	chr1:76734080-76734081
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11162104	0.84[JPT][hapmap]
rs11162105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12069137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4949624	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4949625	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1499	chr1:76704981-76749688	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76726400-76734200	Weak transcription	Thymus	Thymus
2	chr1:76726400-76740000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr1:76727400-76744800	Weak transcription	Aorta	Aorta
4	chr1:76731800-76736200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr1:76731800-76736600	Enhancers	Fetal Thymus	thymus
6	chr1:76732000-76737000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:76732000-76737600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr1:76732200-76736400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:76732200-76736400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr1:76732200-76737000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr1:76732400-76735200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:76732400-76735600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr1:76732600-76734400	Weak transcription	Adipose Nuclei	Adipose
14	chr1:76732600-76735000	Enhancers	Dnd41	blood
15	chr1:76732800-76735000	Enhancers	Fetal Kidney	kidney
16	chr1:76732800-76735800	Enhancers	Fetal Lung	lung
17	chr1:76732800-76736000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:76733000-76734400	Weak transcription	Left Ventricle	heart
19	chr1:76733000-76734400	Weak transcription	Psoas Muscle	Psoas
20	chr1:76733000-76735400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:76733000-76735800	Enhancers	Primary hematopoietic stem cells	blood
22	chr1:76733000-76735800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr1:76733000-76737000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr1:76733200-76734400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:76733200-76734600	Flanking Active TSS	Primary T cells from cord blood	blood
26	chr1:76733200-76734600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr1:76733200-76735800	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr1:76733400-76735000	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr1:76733400-76735600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:76733400-76735600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr1:76733600-76735600	Enhancers	Brain Hippocampus Middle	brain
32	chr1:76733800-76734200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr1:76733800-76735000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr1:76733800-76735000	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr1:76733800-76735000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:76733800-76735200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr1:76733800-76735600	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr1:76733800-76735600	Enhancers	HSMMtube	muscle
39	chr1:76733800-76735800	Enhancers	Brain Cingulate Gyrus	brain
40	chr1:76733800-76735800	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr1:76733800-76736600	Enhancers	Fetal Muscle Leg	muscle
42	chr1:76733800-76736800	Enhancers	Primary T cells fromperipheralblood	blood
43	chr1:76734000-76734200	Enhancers	Brain Anterior Caudate	brain
44	chr1:76734000-76734200	Enhancers	Spleen	Spleen
45	chr1:76734000-76734400	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr1:76734000-76734400	Enhancers	Primary B cells from peripheral blood	blood
47	chr1:76734000-76734600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr1:76734000-76734600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr1:76734000-76734800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:76734000-76734800	Enhancers	Right Atrium	heart

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