Variant report

Variant	rs9454707
Chromosome Location	chr6:69851101-69851102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1336633	0.81[EUR][1000 genomes]
rs1482328	0.81[EUR][1000 genomes]
rs1482329	0.81[EUR][1000 genomes]
rs1482331	0.81[EUR][1000 genomes]
rs1567659	0.82[EUR][1000 genomes]
rs1567660	0.81[EUR][1000 genomes]
rs1586042	0.83[EUR][1000 genomes]
rs1586043	0.83[EUR][1000 genomes]
rs1592054	0.83[EUR][1000 genomes]
rs1592056	0.83[EUR][1000 genomes]
rs1600873	0.83[EUR][1000 genomes]
rs1825195	0.81[EUR][1000 genomes]
rs2128291	0.83[EUR][1000 genomes]
rs3778238	0.81[EUR][1000 genomes]
rs4457127	0.83[EUR][1000 genomes]
rs4706866	0.82[EUR][1000 genomes]
rs6918978	0.81[EUR][1000 genomes]
rs6920644	0.81[EUR][1000 genomes]
rs6929969	0.83[EUR][1000 genomes]
rs7747753	0.83[EUR][1000 genomes]
rs9294820	0.81[EUR][1000 genomes]
rs9294821	0.81[EUR][1000 genomes]
rs9294822	0.81[EUR][1000 genomes]
rs9342741	0.81[EUR][1000 genomes]
rs9342742	0.82[EUR][1000 genomes]
rs9346266	0.83[EUR][1000 genomes]
rs9351745	0.81[EUR][1000 genomes]
rs9354820	0.82[EUR][1000 genomes]
rs9360376	0.81[EUR][1000 genomes]
rs9360377	0.82[EUR][1000 genomes]
rs9360379	0.83[EUR][1000 genomes]
rs9446099	0.83[EUR][1000 genomes]
rs9454706	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2754259	chr6:69825681-69858930	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69850000-69852200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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