Variant report

Variant	rs9454727
Chromosome Location	chr6:70003389-70003390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17747612	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3799077	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446109	1.00[ASN][1000 genomes]
rs9454725	0.91[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv886139	chr6:69979989-70041922	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69991000-70003400	Weak transcription	Fetal Brain Female	brain
2	chr6:69994400-70015400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:70000000-70007600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:70000200-70009000	Weak transcription	Fetal Brain Male	brain
5	chr6:70000600-70007400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:70002800-70003600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:70002800-70003800	Enhancers	Right Atrium	heart
8	chr6:70003000-70003400	Weak transcription	Brain Angular Gyrus	brain
9	chr6:70003200-70003600	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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