Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-QKI-5	chr6:165341827-165342411	XLOC_005534

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs4515355	0.87[EUR][1000 genomes]
rs58770517	0.91[ASN][1000 genomes]
rs6919089	0.95[EUR][1000 genomes]
rs6919144	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6927372	0.90[ASN][1000 genomes]
rs6939583	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6942200	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73245980	0.92[ASN][1000 genomes]
rs73247835	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7752478	0.91[ASN][1000 genomes]
rs7753452	0.91[ASN][1000 genomes]
rs7772470	0.91[ASN][1000 genomes]
rs9347051	0.90[EUR][1000 genomes]
rs9347950	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9347953	1.00[EUR][1000 genomes]
rs9356308	0.95[EUR][1000 genomes]
rs9365815	0.90[EUR][1000 genomes]
rs9365826	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9365837	0.85[EUR][1000 genomes]
rs9365838	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv521153	chr6:165279393-165343557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165333200-165346200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:165339600-165342800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:165340800-165344000	Active TSS	Brain Anterior Caudate	brain
4	chr6:165341200-165342600	Active TSS	Brain Germinal Matrix	brain
5	chr6:165341200-165342600	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr6:165341200-165342800	Active TSS	Brain Angular Gyrus	brain
7	chr6:165341200-165342800	Active TSS	Brain Hippocampus Middle	brain
8	chr6:165341200-165343000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:165341200-165343200	Active TSS	Fetal Brain Female	brain
10	chr6:165341600-165343200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:165341600-165343200	Active TSS	Brain Substantia Nigra	brain
12	chr6:165341800-165342400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr6:165341800-165343400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr6:165342000-165342400	Flanking Active TSS	Brain Cingulate Gyrus	brain
15	chr6:165342200-165342400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:165342200-165342800	Enhancers	Fetal Muscle Trunk	muscle
17	chr6:165342200-165343000	Enhancers	HSMM	muscle
18	chr6:165342200-165343200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:165342200-165343400	Enhancers	Fetal Muscle Leg	muscle

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