Variant report

Variant	rs9457165
Chromosome Location	chr6:166761245-166761246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12214433	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12214614	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13204594	0.89[JPT][hapmap]
rs4610538	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55798887	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7454264	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9347123	0.86[YRI][hapmap]
rs9459656	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9457165	DACT2	cis	parietal	SCAN
rs9457165	BRP44L	cis	parietal	SCAN
rs9457165	NCRNA00242	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166757000-166765200	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:166757000-166765400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:166757000-166779200	Weak transcription	Right Atrium	heart
4	chr6:166757400-166762600	Enhancers	HepG2	liver
5	chr6:166759800-166762000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:166759800-166763000	Enhancers	Liver	Liver
7	chr6:166760400-166762200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:166760600-166761400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:166761000-166761400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:166761200-166761400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:166761200-166765200	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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