Variant report

Variant	rs9457189
Chromosome Location	chr6:167006019-167006020
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167005324..167007495-chr6:167014503..167017118,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12190451	0.83[CHB][hapmap]
rs3778384	0.82[CHB][hapmap]
rs3778385	0.82[CHB][hapmap]
rs3778386	0.82[CHB][hapmap]
rs3799597	0.83[CHB][hapmap]
rs3799598	0.86[CHB][hapmap]
rs3799600	0.83[CHB][hapmap]
rs3799603	0.83[CHB][hapmap]
rs3799606	0.96[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes]
rs4710069	0.82[CHB][hapmap]
rs4710070	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs4710071	0.82[CHB][hapmap]
rs6928849	0.82[CHB][hapmap]
rs9295353	0.84[JPT][hapmap]
rs9295355	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs9457187	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1029530	chr6:166977678-167016052	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166989000-167011400	Weak transcription	Ovary	ovary
2	chr6:166995000-167008400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:166998000-167011200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:167000800-167006200	Enhancers	Fetal Heart	heart
5	chr6:167002200-167006600	Enhancers	Psoas Muscle	Psoas
6	chr6:167002600-167011400	Weak transcription	Right Atrium	heart
7	chr6:167002600-167013200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:167003000-167009000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:167003000-167010400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:167003000-167010800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:167003200-167006400	Weak transcription	Primary T cells from cord blood	blood
12	chr6:167003200-167009600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:167003200-167011200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:167003200-167011200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:167003400-167009000	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:167003600-167008200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:167003600-167008200	Weak transcription	NHDF-Ad	bronchial
18	chr6:167003600-167008800	Weak transcription	HMEC	breast
19	chr6:167003600-167010400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:167003600-167011600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:167003600-167013000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:167003800-167008800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:167003800-167009000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:167004000-167008200	Weak transcription	HSMM	muscle
25	chr6:167004000-167009000	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:167004000-167009200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:167004000-167010600	Weak transcription	Fetal Stomach	stomach
28	chr6:167004000-167010600	Weak transcription	Gastric	stomach
29	chr6:167004200-167006400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:167004200-167008800	Weak transcription	Fetal Muscle Leg	muscle
31	chr6:167004200-167009000	Weak transcription	Brain Substantia Nigra	brain
32	chr6:167004200-167010400	Weak transcription	HUVEC	blood vessel
33	chr6:167004200-167010800	Weak transcription	Spleen	Spleen
34	chr6:167004200-167012200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:167004400-167009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:167004600-167006600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:167004600-167010800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr6:167004800-167009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:167004800-167009600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:167004800-167010400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:167004800-167010400	Weak transcription	Brain Anterior Caudate	brain
42	chr6:167004800-167010600	Weak transcription	Esophagus	oesophagus
43	chr6:167005000-167009600	Weak transcription	Brain Angular Gyrus	brain
44	chr6:167005000-167010400	Weak transcription	Pancreas	Pancrea
45	chr6:167005400-167006200	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr6:167005400-167006400	Enhancers	HSMMtube	muscle
47	chr6:167005400-167006600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:167005400-167007000	Enhancers	NH-A	brain
49	chr6:167005400-167010800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr6:167005600-167006600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links