Variant report

Variant	rs9461090
Chromosome Location	chr6:25016224-25016225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs441342	0.86[ASN][1000 genomes]
rs9348655	0.86[ASN][1000 genomes]
rs9348656	0.86[ASN][1000 genomes]
rs9348657	0.86[ASN][1000 genomes]
rs9356953	0.86[ASN][1000 genomes]
rs9358821	0.90[EUR][1000 genomes]
rs9358822	0.90[EUR][1000 genomes]
rs9358823	0.86[ASN][1000 genomes]
rs9358824	0.82[ASN][1000 genomes]
rs9379706	0.86[ASN][1000 genomes]
rs9393607	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv883482	chr6:24926730-25035920	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv1030634	chr6:24938277-25040161	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv830610	chr6:24951741-25124239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24997800-25016600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:25007400-25017600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:25008000-25016600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr6:25010000-25017400	Enhancers	Hela-S3	cervix
5	chr6:25010000-25018000	Enhancers	HMEC	breast
6	chr6:25010400-25017200	Enhancers	Osteobl	bone
7	chr6:25011000-25016800	Enhancers	HSMM	muscle
8	chr6:25011200-25023400	Weak transcription	Thymus	Thymus
9	chr6:25011200-25035600	Weak transcription	Spleen	Spleen
10	chr6:25012200-25018400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:25012600-25016800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:25012600-25018400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:25012600-25018600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:25012800-25018600	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:25013000-25016600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:25013000-25018200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr6:25013200-25017400	Weak transcription	Placenta	Placenta
18	chr6:25013400-25016400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:25013600-25017800	Weak transcription	NH-A	brain
20	chr6:25013800-25018400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:25014200-25016800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:25014200-25018800	Enhancers	Primary B cells from cord blood	blood
23	chr6:25014400-25018200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:25014600-25017200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr6:25014600-25018400	Enhancers	Primary T cells from cord blood	blood
26	chr6:25014800-25016600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:25014800-25016800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:25014800-25017000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:25014800-25018000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr6:25014800-25018400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:25015000-25018400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr6:25015200-25016600	Genic enhancers	Primary T cells fromperipheralblood	blood
33	chr6:25015200-25017400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:25015200-25018200	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr6:25015200-25018400	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr6:25015400-25016600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:25015400-25016600	Enhancers	Lung	lung
38	chr6:25015400-25017000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:25015400-25018200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:25015600-25016600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:25015600-25016800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr6:25015600-25016800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr6:25015600-25016800	Enhancers	NHDF-Ad	bronchial
44	chr6:25015600-25017800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr6:25015600-25018200	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr6:25015600-25018600	Enhancers	NHEK	skin
47	chr6:25015600-25023600	Weak transcription	Fetal Thymus	thymus
48	chr6:25015800-25016400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr6:25015800-25016400	Enhancers	Brain Germinal Matrix	brain
50	chr6:25015800-25016600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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