The 2.0 version of rSNPBase

Variant report

Variant rs9461161
Chromosome Location chr6:25405259-25405260
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:25377400-25410600 Weak transcription Gastric stomach
2 chr6:25397600-25405600 Weak transcription Stomach Mucosa stomach
3 chr6:25402200-25406200 Weak transcription HUES64 Cell Line embryonic stem cell
4 chr6:25402200-25409600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr6:25403600-25406000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr6:25403600-25406400 Enhancers iPS-15b Cell Line embryonic stem cell
7 chr6:25403600-25408200 Enhancers HUES48 Cell Line embryonic stem cell
8 chr6:25403800-25406000 Enhancers Brain Substantia Nigra brain
9 chr6:25403800-25406400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr6:25403800-25406400 Weak transcription Spleen Spleen
11 chr6:25403800-25410600 Weak transcription Pancreas Pancrea
12 chr6:25404200-25406000 Enhancers iPS-20b Cell Line embryonic stem cell
13 chr6:25404400-25406400 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
14 chr6:25404400-25406600 Enhancers Colonic Mucosa Colon
15 chr6:25404400-25406600 Flanking Active TSS Monocytes-CD14+_RO01746 blood
16 chr6:25404400-25407400 Weak transcription Cortex derived primary cultured neurospheres brain
17 chr6:25404400-25407600 Weak transcription ES-I3 Cell Line embryonic stem cell
18 chr6:25404400-25410800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
19 chr6:25404600-25406000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr6:25404800-25405400 Active TSS Primary T helper naive cells from peripheral blood blood
21 chr6:25404800-25405600 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
22 chr6:25404800-25405600 Active TSS Thymus Thymus
23 chr6:25404800-25405800 Enhancers HUES6 Cell Line embryonic stem cell
24 chr6:25404800-25405800 Flanking Active TSS Primary B cells from peripheral blood blood
25 chr6:25404800-25405800 Flanking Active TSS Fetal Thymus thymus
26 chr6:25404800-25406000 Weak transcription Sigmoid Colon Sigmoid Colon
27 chr6:25404800-25406600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
28 chr6:25405000-25405400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr6:25405000-25405400 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr6:25405000-25405400 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr6:25405000-25405400 Flanking Active TSS Primary T cells fromperipheralblood blood
32 chr6:25405000-25405400 Active TSS Primary T helper memory cells from peripheral blood 2 blood
33 chr6:25405000-25405400 Active TSS Primary T killer memory cells from peripheral blood blood
34 chr6:25405000-25405400 Active TSS Primary mononuclear cells fromperipheralblood Blood
35 chr6:25405000-25405400 Active TSS Aorta Aorta
36 chr6:25405000-25405400 Flanking Active TSS Rectal Mucosa Donor 31 rectum
37 chr6:25405000-25405400 Enhancers Stomach Smooth Muscle stomach
38 chr6:25405000-25405600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
39 chr6:25405000-25405600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr6:25405000-25405600 Flanking Active TSS NHEK skin
41 chr6:25405000-25405800 Enhancers Breast Myoepithelial Primary Cells Breast
42 chr6:25405000-25405800 Flanking Active TSS Primary monocytes fromperipheralblood blood
43 chr6:25405000-25405800 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
44 chr6:25405000-25406000 Flanking Active TSS Primary hematopoietic stem cells blood
45 chr6:25405000-25406000 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
46 chr6:25405000-25406000 Flanking Active TSS Duodenum Mucosa Duodenum
47 chr6:25405000-25406000 Enhancers Fetal Intestine Small intestine
48 chr6:25405000-25406000 Enhancers Skeletal Muscle Male skeletal muscle
49 chr6:25405000-25406200 Enhancers iPS-18 Cell Line embryonic stem cell
50 chr6:25405000-25406200 Enhancers Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015