Variant report

Variant	rs9461329
Chromosome Location	chr6:27046292-27046293
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:27046239-27047362	SK-N-SH	brain:	n/a	n/a
2	RAD21	chr6:27046234-27047513	SK-N-SH	brain:	n/a	n/a
3	SMC3	chr6:27046285-27047300	SK-N-SH	brain:	n/a	chr6:27046846-27046860 chr6:27046848-27046862

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27037953..27040598-chr6:27044912..27046900,2	MCF-7	breast:
2	chr6:26596507..26599265-chr6:27045244..27047262,3	K562	blood:
3	chr6:26596507..26599265-chr6:27045244..27046828,2	K562	blood:
4	chr6:27043192..27047825-chr6:27099036..27106055,7	K562	blood:
5	chr6:27045716..27047825-chr6:27099036..27103328,4	K562	blood:
6	chr6:26985450..26988105-chr6:27045850..27047500,2	MCF-7	breast:
7	chr6:26607293..26608283-chr6:27046032..27047188,9	K562	blood:
8	chr6:26053749..26055733-chr6:27045370..27048111,2	K562	blood:

No data

Variant related genes	Relation type
VN1R11P	TF binding region
ENSG00000124635	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000146109	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2008668	0.87[ASN][1000 genomes]
rs2754597	0.87[ASN][1000 genomes]
rs35741362	0.81[ASN][1000 genomes]
rs4602717	0.87[ASN][1000 genomes]
rs6904523	0.81[ASN][1000 genomes]
rs6913271	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6920796	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6929114	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6931748	0.81[ASN][1000 genomes]
rs6932003	0.87[ASN][1000 genomes]
rs73384398	0.87[ASN][1000 genomes]
rs7739691	0.81[ASN][1000 genomes]
rs7751878	0.87[ASN][1000 genomes]
rs9295729	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9357029	0.87[ASN][1000 genomes]
rs9368487	0.87[ASN][1000 genomes]
rs9461317	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9461318	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9467934	0.87[ASN][1000 genomes]
rs9467947	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9467972	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9467973	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	esv2758038	chr6:26695219-27095714	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
3	esv2759410	chr6:26695219-27095714	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
4	nsv1029124	chr6:26825468-27109774	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	244 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27034600-27046400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:27036600-27046600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:27044800-27046400	Weak transcription	HepG2	liver
4	chr6:27045200-27046400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:27045400-27046400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:27045400-27046400	Enhancers	Brain Substantia Nigra	brain
7	chr6:27045600-27046400	Enhancers	Brain Cingulate Gyrus	brain
8	chr6:27045800-27046800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:27046000-27046400	Enhancers	Brain Hippocampus Middle	brain
10	chr6:27046200-27046400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
11	chr6:27046200-27046400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:27046200-27046400	Enhancers	Brain Angular Gyrus	brain
13	chr6:27046200-27046400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr6:27046200-27046400	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr6:27046200-27046400	Enhancers	HMEC	breast
16	chr6:27046200-27046600	Flanking Active TSS	GM12878-XiMat	blood
17	chr6:27046200-27047000	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr6:27046200-27047000	Active TSS	H1 Cell Line	embryonic stem cell
19	chr6:27046200-27047000	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr6:27046200-27047000	Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr6:27046200-27047000	Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr6:27046200-27047000	Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr6:27046200-27047000	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr6:27046200-27047000	Active TSS	A549	lung
25	chr6:27046200-27047000	Active TSS	K562	blood
26	chr6:27046200-27047200	Active TSS	iPS-20b Cell Line	embryonic stem cell

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