Variant report

Variant	rs9461338
Chromosome Location	chr6:27173444-27173445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27171643..27174637-chr6:27189780..27192131,2	K562	blood:
2	chr6:27172666..27175265-chr6:27265465..27267285,2	K562	blood:
3	chr6:27171746..27174029-chr6:27180862..27184062,3	K562	blood:
4	chr6:27164367..27166691-chr6:27171692..27173483,2	MCF-7	breast:
5	chr6:27113325..27119101-chr6:27172973..27177922,8	K562	blood:
6	chr6:27172465..27174162-chr6:27404075..27406458,2	K562	blood:
7	chr6:27170157..27172532-chr6:27173101..27175252,2	MCF-7	breast:
8	chr6:27173443..27175541-chr6:27778725..27781351,2	K562	blood:
9	chr6:27162610..27164330-chr6:27172522..27175063,2	K562	blood:
10	chr6:27164413..27166775-chr6:27172734..27175506,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197903	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000184825	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs9461346	1.00[YRI][hapmap]
rs9461347	1.00[YRI][hapmap]
rs9461348	1.00[YRI][hapmap]
rs9461350	1.00[YRI][hapmap]
rs9461351	1.00[YRI][hapmap]
rs9461352	1.00[YRI][hapmap]
rs9461354	1.00[YRI][hapmap]
rs9468028	1.00[YRI][hapmap]
rs9468029	1.00[YRI][hapmap]
rs9468039	1.00[YRI][hapmap]
rs9468040	1.00[YRI][hapmap]
rs9468041	1.00[YRI][hapmap]
rs9468042	1.00[YRI][hapmap]
rs9468043	1.00[YRI][hapmap]
rs9468047	1.00[YRI][hapmap]
rs9468048	1.00[YRI][hapmap]
rs9468049	1.00[YRI][hapmap]
rs9468050	1.00[YRI][hapmap]
rs9468052	1.00[YRI][hapmap]
rs9468054	1.00[YRI][hapmap]
rs9468056	1.00[YRI][hapmap]
rs9468059	1.00[YRI][hapmap]
rs9468061	1.00[YRI][hapmap]
rs9468062	1.00[YRI][hapmap]
rs9468063	1.00[YRI][hapmap]
rs956150	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27173000-27173600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
2	chr6:27173000-27174000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr6:27173000-27174200	Active TSS	H1 Cell Line	embryonic stem cell
4	chr6:27173000-27174200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr6:27173200-27173600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr6:27173200-27173600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:27173200-27173800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:27173200-27173800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:27173200-27173800	Flanking Active TSS	K562	blood
10	chr6:27173200-27173800	Bivalent/Poised TSS	NHEK	skin
11	chr6:27173200-27174000	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:27173200-27174200	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:27173200-27174200	Active TSS	H9 Cell Line	embryonic stem cell
14	chr6:27173200-27174200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:27173200-27174200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:27173200-27174200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:27173200-27174400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:27173200-27174400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr6:27173200-27174400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr6:27173200-27174600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:27173400-27173600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
22	chr6:27173400-27173600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:27173400-27173600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
24	chr6:27173400-27173600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
25	chr6:27173400-27173600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
26	chr6:27173400-27173600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:27173400-27173600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:27173400-27173600	Bivalent Enhancer	Adipose Nuclei	Adipose
29	chr6:27173400-27173800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
30	chr6:27173400-27173800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
31	chr6:27173400-27173800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:27173400-27173800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:27173400-27173800	Flanking Bivalent TSS/Enh	Placenta	Placenta
34	chr6:27173400-27174000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:27173400-27174000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
36	chr6:27173400-27174000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:27173400-27174000	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:27173400-27174200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:27173400-27174200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:27173400-27174200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:27173400-27174200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:27173400-27174400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
43	chr6:27173400-27174400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:27173400-27174400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
45	chr6:27173400-27174400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:27173400-27174400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
47	chr6:27173400-27174400	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
48	chr6:27173400-27174400	Bivalent/Poised TSS	Osteobl	bone

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