Variant report

Variant	rs9461544
Chromosome Location	chr6:29641295-29641296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28454102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28691779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58558214	1.00[AMR][1000 genomes]
rs9404928	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468585	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468588	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9468592	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29625000-29663600	Weak transcription	Right Atrium	heart
2	chr6:29630800-29643200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:29634600-29642000	Weak transcription	Brain Angular Gyrus	brain
4	chr6:29636400-29643800	Weak transcription	Fetal Heart	heart
5	chr6:29636600-29642000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:29636600-29644800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:29637000-29644400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:29638800-29644400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:29639600-29641400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:29639600-29641400	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:29639600-29641400	Weak transcription	Brain Substantia Nigra	brain
12	chr6:29639600-29647400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:29639800-29643400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:29640600-29641400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:29640600-29643800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:29640800-29643000	Weak transcription	NHEK	skin
17	chr6:29641200-29641400	Weak transcription	Brain Anterior Caudate	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links