Variant report

Variant	rs9461916
Chromosome Location	chr6:33796794-33796795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33794613..33797241-chr6:33797718..33800343,2	K562	blood:
2	chr6:33794679..33797387-chr6:33799948..33801747,2	MCF-7	breast:
3	chr6:33785785..33787790-chr6:33794712..33797065,2	K562	blood:
4	chr6:33755377..33757050-chr6:33795236..33797558,2	MCF-7	breast:
5	chr6:33795530..33798300-chr6:33803409..33806426,4	MCF-7	breast:
6	chr6:33796210..33797861-chr6:33802037..33804475,2	MCF-7	breast:
7	chr6:33795996..33798344-chr6:33806425..33808689,2	K562	blood:

Variant related genes	Relation type
ENSG00000161904	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10947450	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6899677	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9461911	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9461913	0.87[AFR][1000 genomes]
rs9461917	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9469603	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885773	chr6:33778964-33813043	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv885774	chr6:33778964-33840121	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv885775	chr6:33788055-33828178	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1032074	chr6:33795671-33835988	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022403	chr6:33795671-33847345	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv13645	chr6:33796274-33797809	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33792800-33797000	Weak transcription	Ovary	ovary
2	chr6:33793000-33798800	Weak transcription	Spleen	Spleen
3	chr6:33794600-33799400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:33795000-33799600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:33795400-33797200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:33795600-33797000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:33795600-33797200	Enhancers	Colon Smooth Muscle	Colon
8	chr6:33795800-33797000	Enhancers	Fetal Kidney	kidney
9	chr6:33795800-33797200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr6:33795800-33797200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
11	chr6:33795800-33798000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:33795800-33798600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:33796000-33797000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:33796000-33797200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:33796000-33797200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr6:33796000-33797200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:33796000-33798000	Enhancers	Right Ventricle	heart
18	chr6:33796000-33798200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:33796200-33796800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr6:33796200-33797200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:33796200-33797200	Bivalent Enhancer	Fetal Stomach	stomach
22	chr6:33796400-33796800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:33796400-33796800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:33796400-33797000	Flanking Active TSS	Stomach Smooth Muscle	stomach
25	chr6:33796400-33797200	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:33796400-33797200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr6:33796400-33797200	Enhancers	Left Ventricle	heart
28	chr6:33796400-33797800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:33796600-33796800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:33796600-33796800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:33796600-33796800	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
32	chr6:33796600-33797000	Weak transcription	A549	lung
33	chr6:33796600-33797200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr6:33796600-33798000	Weak transcription	Rectal Smooth Muscle	rectum

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