Variant report

Variant	rs9462270
Chromosome Location	chr6:37106486-37106487
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37105880..37107454-chr6:37108866..37110406,2	MCF-7	breast:
2	chr6:37094490..37097324-chr6:37105749..37107253,2	MCF-7	breast:
3	chr6:37093651..37095683-chr6:37105957..37108769,2	K562	blood:
4	chr6:37073648..37076297-chr6:37105144..37107606,2	MCF-7	breast:
5	chr6:37103418..37107139-chr6:37107617..37110665,3	K562	blood:
6	chr6:37096514..37098920-chr6:37104351..37107169,3	K562	blood:
7	chr6:37104897..37107687-chr6:37150171..37152917,2	K562	blood:
8	chr6:37105482..37108115-chr6:37135439..37137000,2	K562	blood:
9	chr6:37105362..37108105-chr6:37116241..37117919,2	K562	blood:
10	chr6:37069334..37071382-chr6:37103565..37107172,5	MCF-7	breast:
11	chr6:37100437..37107412-chr6:37134497..37140712,18	MCF-7	breast:
12	chr6:37100909..37108375-chr6:37132663..37140432,15	MCF-7	breast:
13	chr6:37103433..37108249-chr6:37120409..37124789,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000252687	Chromatin interaction
ENSG00000137193	Chromatin interaction

rs_ID	r²[population]
rs9462262	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37101400-37108200	Enhancers	Fetal Stomach	stomach
2	chr6:37103000-37106800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:37103000-37106800	Enhancers	NHEK	skin
4	chr6:37103200-37109200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:37103600-37115800	Weak transcription	Small Intestine	intestine
6	chr6:37103800-37106600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:37104200-37107200	Enhancers	Colon Smooth Muscle	Colon
8	chr6:37105000-37107600	Enhancers	K562	blood
9	chr6:37105200-37107400	Enhancers	NHLF	lung
10	chr6:37105200-37109800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:37105400-37106600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:37105400-37107400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:37105400-37109400	Weak transcription	Right Atrium	heart
14	chr6:37105400-37113800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:37105400-37116200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:37105600-37107000	Weak transcription	Fetal Brain Female	brain
17	chr6:37105600-37107400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr6:37105600-37107600	Enhancers	Fetal Kidney	kidney
19	chr6:37105600-37109000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:37105600-37109200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:37105600-37109200	Weak transcription	Psoas Muscle	Psoas
22	chr6:37105600-37109200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:37105600-37113200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:37105800-37107600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:37105800-37107600	Enhancers	Fetal Intestine Large	intestine
26	chr6:37105800-37107600	Enhancers	Placenta Amnion	Placenta Amnion
27	chr6:37105800-37108000	Enhancers	Fetal Intestine Small	intestine
28	chr6:37105800-37108800	Weak transcription	Brain Germinal Matrix	brain
29	chr6:37105800-37108800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr6:37105800-37109000	Weak transcription	Ovary	ovary
31	chr6:37105800-37109200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:37105800-37109200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr6:37105800-37109400	Weak transcription	Brain Anterior Caudate	brain
34	chr6:37105800-37109800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr6:37105800-37110000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:37105800-37110200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr6:37105800-37110400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr6:37105800-37116200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:37106000-37106600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:37106000-37107000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:37106000-37107000	Weak transcription	Fetal Brain Male	brain
42	chr6:37106000-37107600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:37106000-37109400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr6:37106000-37110000	Weak transcription	Stomach Mucosa	stomach
45	chr6:37106000-37111200	Enhancers	Placenta	Placenta
46	chr6:37106000-37116200	Weak transcription	Esophagus	oesophagus
47	chr6:37106200-37106600	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr6:37106200-37106600	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr6:37106200-37106600	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr6:37106200-37106800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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