Variant report

Variant	rs9463440
Chromosome Location	chr6:48711041-48711042
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10498777	0.81[ASN][1000 genomes]
rs10807396	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11962463	0.81[ASN][1000 genomes]
rs11967676	1.00[ASN][1000 genomes]
rs11968077	0.90[ASN][1000 genomes]
rs11969582	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16877973	1.00[ASN][1000 genomes]
rs16878200	0.81[ASN][1000 genomes]
rs17289986	0.81[ASN][1000 genomes]
rs2474494	1.00[ASN][1000 genomes]
rs2495920	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4144036	1.00[ASN][1000 genomes]
rs4715097	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55683183	1.00[ASN][1000 genomes]
rs56204989	1.00[ASN][1000 genomes]
rs56975981	0.81[ASN][1000 genomes]
rs57262789	0.90[ASN][1000 genomes]
rs59704925	0.81[ASN][1000 genomes]
rs6900138	0.81[ASN][1000 genomes]
rs6907997	0.90[ASN][1000 genomes]
rs6914646	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935064	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869027	1.00[ASN][1000 genomes]
rs72869031	1.00[ASN][1000 genomes]
rs72869034	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869036	1.00[ASN][1000 genomes]
rs72869052	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869077	0.90[ASN][1000 genomes]
rs72869083	0.90[ASN][1000 genomes]
rs72869092	0.85[ASN][1000 genomes]
rs72870818	0.81[ASN][1000 genomes]
rs72870857	0.81[ASN][1000 genomes]
rs72870893	0.81[ASN][1000 genomes]
rs72870898	0.81[ASN][1000 genomes]
rs72870901	0.81[ASN][1000 genomes]
rs72872305	0.81[ASN][1000 genomes]
rs72872308	0.81[ASN][1000 genomes]
rs72872314	0.81[ASN][1000 genomes]
rs72872343	0.81[ASN][1000 genomes]
rs72872348	0.81[ASN][1000 genomes]
rs72872354	0.81[ASN][1000 genomes]
rs72872357	0.81[ASN][1000 genomes]
rs72872364	0.81[ASN][1000 genomes]
rs72872366	0.81[ASN][1000 genomes]
rs72872368	0.81[ASN][1000 genomes]
rs7767482	0.81[ASN][1000 genomes]
rs7770365	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771117	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9381691	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395402	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9395405	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9473472	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9473474	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033151	chr6:48067287-48797029	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538217	chr6:48067287-48797029	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752125	chr6:48575963-48718589	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1034217	chr6:48601590-48714176	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv603036	chr6:48601723-48711041	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1015258	chr6:48607583-48714176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv885879	chr6:48634956-48730669	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48687600-48715000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:48704600-48711200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:48704800-48712200	Weak transcription	Osteobl	bone

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