Variant report

Variant	rs9463501
Chromosome Location	chr6:49517565-49517566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
C6orf141	TF binding region
ENSG00000031691	Chromatin interaction
ENSG00000197261	Chromatin interaction
ENSG00000146085	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12214715	0.83[ASN][1000 genomes]
rs13196352	0.98[ASN][1000 genomes]
rs13197588	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206340	0.94[ASN][1000 genomes]
rs2127758	0.94[ASN][1000 genomes]
rs4715135	0.90[ASN][1000 genomes]
rs4715136	0.98[ASN][1000 genomes]
rs749515	0.94[ASN][1000 genomes]
rs9463500	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024959	chr6:49290141-49652124	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1021136	chr6:49295037-49631278	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv885881	chr6:49439805-49575141	Weak transcription Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv933942	chr6:49480550-50004231	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv933833	chr6:49515134-49961765	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49510400-49517600	Weak transcription	NHEK	skin
2	chr6:49510800-49517800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:49515800-49517600	Weak transcription	HMEC	breast
4	chr6:49516600-49517800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:49517200-49517600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:49517200-49517800	Weak transcription	A549	lung
7	chr6:49517400-49517600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:49517400-49517800	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:49517400-49518000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:49517400-49519800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr6:49517400-49520000	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr6:49517400-49520000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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