Variant report

Variant	rs9464119
Chromosome Location	chr6:54573776-54573777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13437299	1.00[AFR][1000 genomes]
rs9474958	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54564400-54575200	Weak transcription	Fetal Lung	lung
2	chr6:54565400-54575400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:54571200-54575200	Weak transcription	Stomach Mucosa	stomach
4	chr6:54571400-54579800	Weak transcription	Fetal Intestine Small	intestine
5	chr6:54573400-54575200	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:54573600-54573800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:54573600-54573800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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