Variant report

Variant	rs9465644
Chromosome Location	chr6:20171267-20171268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:20168910..20174410-chr6:20402241..20406110,6	K562	blood:

Variant related genes	Relation type
ENSG00000112242	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9460463	0.83[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029729	chr6:20113226-20235122	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538155	chr6:20113226-20235122	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1033904	chr6:20127596-20210374	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1032899	chr6:20170426-20197881	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:20139400-20173400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr6:20139600-20201200	Weak transcription	Fetal Lung	lung
3	chr6:20151600-20173400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:20152000-20173800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:20152200-20173200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:20152200-20173800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:20152200-20183200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:20152400-20173000	Weak transcription	Dnd41	blood
9	chr6:20152400-20173800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:20153000-20181400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:20154400-20173800	Weak transcription	Fetal Intestine Large	intestine
12	chr6:20155600-20174200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:20157400-20171400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr6:20157600-20174400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:20161400-20179400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:20162000-20180600	Weak transcription	Pancreas	Pancrea
17	chr6:20162800-20193000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:20163800-20183200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:20167000-20173000	Weak transcription	GM12878-XiMat	blood
20	chr6:20167200-20172400	Weak transcription	Fetal Intestine Small	intestine
21	chr6:20167200-20173800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:20167200-20173800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:20167200-20182800	Weak transcription	Fetal Stomach	stomach
24	chr6:20168400-20174200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:20168800-20171400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:20169200-20171400	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr6:20169200-20180400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr6:20169200-20186600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:20169400-20171400	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:20169600-20176200	Weak transcription	Stomach Mucosa	stomach
31	chr6:20169800-20174000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr6:20170000-20171400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr6:20170000-20174200	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr6:20170400-20172600	Weak transcription	Primary hematopoietic stem cells	blood
35	chr6:20170400-20174400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:20170400-20174400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:20170400-20180400	Weak transcription	Fetal Heart	heart
38	chr6:20170400-20186000	Weak transcription	NHDF-Ad	bronchial
39	chr6:20170400-20186600	Weak transcription	Psoas Muscle	Psoas
40	chr6:20170600-20180400	Weak transcription	Left Ventricle	heart
41	chr6:20170600-20183000	Weak transcription	Esophagus	oesophagus
42	chr6:20170600-20184400	Weak transcription	Spleen	Spleen
43	chr6:20170600-20186200	Weak transcription	Aorta	Aorta
44	chr6:20170600-20192600	Weak transcription	Ovary	ovary
45	chr6:20170800-20171400	Enhancers	Primary T cells from cord blood	blood
46	chr6:20170800-20174400	Weak transcription	Small Intestine	intestine
47	chr6:20171000-20173000	Weak transcription	Right Atrium	heart
48	chr6:20171000-20173000	Weak transcription	Right Ventricle	heart
49	chr6:20171000-20173200	Weak transcription	K562	blood
50	chr6:20171000-20180600	Weak transcription	Gastric	stomach

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