Variant report

Variant	rs9466030
Chromosome Location	chr6:21310031-21310032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs807855	0.92[EUR][1000 genomes]
rs807856	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs807858	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830600	chr6:21133128-21312355	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv883473	chr6:21286834-21347410	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv462654	chr6:21296403-21322783	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv601091	chr6:21296403-21322783	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:21307000-21310200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:21307200-21310200	Weak transcription	Fetal Lung	lung
3	chr6:21309200-21314600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:21309600-21310600	Enhancers	Fetal Brain Male	brain
5	chr6:21310000-21310200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:21310000-21310200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:21310000-21310200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:21310000-21310200	Flanking Active TSS	Brain Anterior Caudate	brain
9	chr6:21310000-21310200	Active TSS	Brain Germinal Matrix	brain
10	chr6:21310000-21310200	Flanking Active TSS	HepG2	liver
11	chr6:21310000-21310400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:21310000-21310400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:21310000-21310400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:21310000-21310400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:21310000-21310400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
16	chr6:21310000-21310400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:21310000-21310400	Active TSS	Adipose Nuclei	Adipose
18	chr6:21310000-21310400	Flanking Active TSS	Liver	Liver
19	chr6:21310000-21310400	Active TSS	Brain Angular Gyrus	brain
20	chr6:21310000-21310400	Active TSS	Brain Hippocampus Middle	brain
21	chr6:21310000-21310400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:21310000-21310400	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr6:21310000-21310400	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr6:21310000-21310400	Bivalent Enhancer	Fetal Stomach	stomach
25	chr6:21310000-21310400	Flanking Active TSS	Ovary	ovary
26	chr6:21310000-21310400	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr6:21310000-21310400	Active TSS	NH-A	brain
28	chr6:21310000-21310400	Active TSS	NHDF-Ad	bronchial
29	chr6:21310000-21310400	Active TSS	NHLF	lung
30	chr6:21310000-21310400	Active TSS	Osteobl	bone
31	chr6:21310000-21310600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:21310000-21310600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:21310000-21310600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:21310000-21310600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
35	chr6:21310000-21310600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr6:21310000-21310600	Active TSS	Fetal Brain Female	brain

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