Variant report
| Variant | rs9468025 |
|---|---|
| Chromosome Location | chr6:27238698-27238699 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:27113551..27116491-chr6:27237691..27240092,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000184825 | Chromatin interaction |
| ENSG00000197903 | Chromatin interaction |
| ENSG00000265565 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11961579 | 0.83[ASN][1000 genomes] |
| rs11964648 | 0.83[ASN][1000 genomes] |
| rs11966320 | 0.84[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs16894944 | 0.83[ASN][1000 genomes] |
| rs5030953 | 0.87[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs5030959 | 0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs5030968 | 0.87[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs57404247 | 0.83[ASN][1000 genomes] |
| rs67310631 | 0.88[AFR][1000 genomes] |
| rs6917419 | 0.84[AFR][1000 genomes] |
| rs6938397 | 0.94[AFR][1000 genomes] |
| rs73388580 | 0.83[ASN][1000 genomes] |
| rs73388593 | 0.83[ASN][1000 genomes] |
| rs73388597 | 0.83[ASN][1000 genomes] |
| rs73388601 | 0.83[ASN][1000 genomes] |
| rs73390612 | 0.83[ASN][1000 genomes] |
| rs73390662 | 0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9295732 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs9368492 | 0.81[AFR][1000 genomes] |
| rs9368493 | 0.81[AFR][1000 genomes] |
| rs9368494 | 0.94[AFR][1000 genomes] |
| rs9379965 | 0.81[AFR][1000 genomes] |
| rs9379967 | 0.91[AFR][1000 genomes] |
| rs9393802 | 0.86[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948921 | chr6:26556890-27443957 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 472 gene(s) | inside rSNPs | diseases |
| 2 | nsv1017328 | chr6:27177147-27369588 | Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 3 | nsv883505 | chr6:27210614-27300580 | Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 4 | esv3392865 | chr6:27237523-27239471 | Weak transcription | Chromatin interactive region | 4 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:27237000-27241800 | Weak transcription | K562 | blood |
