Variant report

Variant	rs9468055
Chromosome Location	chr6:27291370-27291371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:27291363-27291413	RPTEC	kidney:	n/a
2	chr6:27291363-27291413	HNPCEpiC	eye:	n/a
3	chr6:27291363-27291413	AG10803	skin:	n/a
4	chr6:27291363-27291413	NHBE	bronchial:	n/a
5	chr6:27291363-27291413	HL-60	blood:	n/a
6	chr6:27291363-27291413	NT2-D1	testis:	n/a
7	chr6:27291363-27291413	HCF	heart:	n/a
8	chr6:27291363-27291413	SK-N-SH_RA	brain:	n/a
9	chr6:27291363-27291413	HRE	kidney:	n/a
10	chr6:27291363-27291413	H1-hESC	embryonic stem cell:	embryo
11	chr6:27291363-27291413	BE2_C	brain:	n/a
12	chr6:27291363-27291413	LNCaP	prostate:	n/a
13	chr6:27291363-27291413	HAEpiC	amniotic membrane:	n/a
14	chr6:27291363-27291413	AoSMC	blood vessel:	n/a
15	chr6:27291363-27291413	AG04449	skin:	fetal
16	chr6:27291363-27291413	U87	brain:	n/a
17	chr6:27291363-27291413	ECC-1	luminal epithelium:	n/a
18	chr6:27291363-27291413	AG09319	gingival:	n/a
19	chr6:27291363-27291413	HEK293	kidney:	embryo
20	chr6:27291363-27291413	Jurkat	blood:	n/a
21	chr6:27291363-27291413	ovcar-3	ovarian:	n/a
22	chr6:27291363-27291413	A549	lung:	n/a
23	chr6:27291363-27291413	HCM	heart:	n/a
24	chr6:27291363-27291413	PFSK-1	brain:	n/a
25	chr6:27291363-27291413	HUVEC	blood vessel:	n/a
26	chr6:27291363-27291413	NH-A	brain:	n/a
27	chr6:27291363-27291413	NHDF-neo	bronchial:	n/a
28	chr6:27291363-27291413	AG09309	skin:	n/a
29	chr6:27291363-27291413	GM12892	blood:	n/a
30	chr6:27291363-27291413	HMEC	breast:	n/a
31	chr6:27291363-27291413	ProgFib	skin:	n/a
32	chr6:27291363-27291413	HCT-116	colon:	n/a
33	chr6:27291363-27291413	MCF-7	breast:	n/a
34	chr6:27291363-27291413	Caco-2	colon:	n/a
35	chr6:27291363-27291413	GM12878	blood:	n/a
36	chr6:27291363-27291413	HIPEpiC	eye:	n/a
37	chr6:27291363-27291413	SK-N-MC	brain:	n/a
38	chr6:27291363-27291413	Hepatocyte	liver:	n/a
39	chr6:27291363-27291413	HRPEpiC	eye:	n/a
40	chr6:27291363-27291413	PANC-1	pancreas:	n/a
41	chr6:27291363-27291413	MCF10A-Er-Src	breast:	n/a
42	chr6:27291363-27291413	HEEpiC	esophagus:	n/a
43	chr6:27291363-27291413	GM06990	blood:	n/a
44	chr6:27291363-27291413	SK-N-SH	brain:	n/a
45	chr6:27291363-27291413	HepG2	liver:	n/a
46	chr6:27291363-27291413	CMK	blood:	n/a
47	chr6:27291363-27291413	SKMC	muscle:	n/a
48	chr6:27291363-27291413	Hela-S3	cervix:	n/a
49	chr6:27291363-27291413	HPAEpiC	pulmonary alveolar:	n/a
50	chr6:27291363-27291413	K562	blood:	n/a

No data

Variant related genes	Relation type
VN1R10P	CpG island

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs28542968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61736094	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61736098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61743942	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61743950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61746402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73738742	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9461346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9461361	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9468028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468036	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9468046	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9468059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9468066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs956149	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs956150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv883505	chr6:27210614-27300580	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv883507	chr6:27279982-27318836	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1823942	chr6:27282284-27295506	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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