Variant report

Variant	rs9468199
Chromosome Location	chr6:27681215-27681216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27661478..27663340-chr6:27680780..27682655,2	K562	blood:
2	chr6:27677806..27681371-chr6:27682071..27685052,3	K562	blood:
3	chr6:27671590..27673866-chr6:27681015..27683164,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10214440	0.88[ASN][1000 genomes]
rs1139226	0.94[ASN][1000 genomes]
rs13215072	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2056925	0.87[ASN][1000 genomes]
rs2394000	0.92[ASN][1000 genomes]
rs34752872	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs35957409	0.82[ASN][1000 genomes]
rs4713118	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6901520	0.83[ASN][1000 genomes]
rs6902689	0.85[ASN][1000 genomes]
rs6914924	0.83[ASN][1000 genomes]
rs6922574	0.88[ASN][1000 genomes]
rs6930992	0.82[ASN][1000 genomes]
rs7760523	0.82[ASN][1000 genomes]
rs7772027	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9283880	0.82[ASN][1000 genomes]
rs9283881	0.82[ASN][1000 genomes]
rs9283882	0.82[ASN][1000 genomes]
rs9283883	0.82[ASN][1000 genomes]
rs9295740	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9295742	0.88[ASN][1000 genomes]
rs9295743	0.81[ASN][1000 genomes]
rs9348774	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9348775	0.88[ASN][1000 genomes]
rs9357045	0.92[ASN][1000 genomes]
rs9366700	0.88[ASN][1000 genomes]
rs9368528	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9368529	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9380010	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9380011	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9380012	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9393847	0.92[ASN][1000 genomes]
rs9393848	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9461401	0.88[ASN][1000 genomes]
rs9461405	0.82[ASN][1000 genomes]
rs9461406	0.86[ASN][1000 genomes]
rs9468195	0.95[ASN][1000 genomes]
rs9468200	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9468201	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9468203	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9468204	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9468206	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9468214	0.83[ASN][1000 genomes]
rs9468217	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv437481	chr6:27655096-27683572	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv601204	chr6:27655564-27689502	Strong transcription Active TSS Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv601205	chr6:27656255-27730064	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv437482	chr6:27670917-27683572	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27662400-27684600	Weak transcription	Lung	lung
2	chr6:27662400-27685600	Weak transcription	Esophagus	oesophagus
3	chr6:27662600-27684000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:27662800-27684000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr6:27662800-27684800	Weak transcription	Fetal Kidney	kidney
6	chr6:27662800-27688400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:27662800-27688600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:27662800-27689000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:27663000-27688600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:27663200-27682400	Weak transcription	Pancreas	Pancrea
11	chr6:27663200-27683800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:27663200-27688400	Weak transcription	HMEC	breast
13	chr6:27663400-27687800	Weak transcription	NHEK	skin
14	chr6:27664600-27684600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:27668200-27684400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:27669800-27684400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr6:27671400-27687200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:27671600-27688600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:27671800-27681400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:27672200-27683000	Weak transcription	Hela-S3	cervix
21	chr6:27673000-27684800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr6:27673200-27684800	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr6:27673600-27687600	Weak transcription	Fetal Intestine Small	intestine
24	chr6:27674600-27687000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr6:27675200-27685000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr6:27677400-27681800	Strong transcription	Fetal Stomach	stomach
27	chr6:27677800-27682200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:27677800-27682800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:27677800-27683600	Weak transcription	Small Intestine	intestine
30	chr6:27678000-27681800	Strong transcription	Primary B cells from peripheral blood	blood
31	chr6:27678000-27682200	Strong transcription	Fetal Intestine Large	intestine
32	chr6:27678000-27682400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:27678000-27682400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr6:27678200-27681800	Strong transcription	Fetal Brain Female	brain
35	chr6:27678200-27682000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr6:27678200-27682400	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:27678400-27681400	Strong transcription	Thymus	Thymus
38	chr6:27678400-27681800	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr6:27678400-27681800	Strong transcription	Ovary	ovary
40	chr6:27678600-27681400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr6:27678800-27682000	Weak transcription	Dnd41	blood
42	chr6:27678800-27684000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr6:27678800-27689000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:27679000-27685000	Weak transcription	Fetal Lung	lung
45	chr6:27679200-27686600	Weak transcription	Fetal Brain Male	brain
46	chr6:27679400-27688400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr6:27680400-27681800	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr6:27680400-27681800	Strong transcription	GM12878-XiMat	blood
49	chr6:27680400-27682200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr6:27680600-27681600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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