Variant report
| Variant | rs9468372 |
|---|---|
| Chromosome Location | chr6:28379361-28379362 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28373595..28375831-chr6:28378815..28380474,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1005125 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1052215 | 0.84[EUR][1000 genomes] |
| rs1124132 | 0.84[EUR][1000 genomes] |
| rs1361387 | 0.82[ASN][1000 genomes] |
| rs2023493 | 0.84[EUR][1000 genomes] |
| rs2108927 | 0.86[EUR][1000 genomes] |
| rs213232 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs213236 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs213237 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2247002 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2531803 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2531825 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2531831 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2531832 | 0.84[EUR][1000 genomes] |
| rs2859365 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4455662 | 0.81[EUR][1000 genomes] |
| rs728122 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs916403 | 0.84[ASN][1000 genomes] |
| rs9368565 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1836974 | chr6:28376981-28398748 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:21)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9468372 | AL022393.7 | cis | Heart Left Ventricle | GTEx |
| rs9468372 | ZSCAN12 | Cis_1M | lymphoblastoid | RTeQTL |
| rs9468372 | RP5-874C20.3 | cis | Thyroid | GTEx |
| rs9468372 | ZSCAN31 | cis | Thyroid | GTEx |
| rs9468372 | ZSCAN23 | cis | Stomach | GTEx |
| rs9468372 | ZSCAN23 | cis | Muscle Skeletal | GTEx |
| rs9468372 | AL022393.7 | cis | lung | GTEx |
| rs9468372 | AL022393.7 | cis | Esophagus Muscularis | GTEx |
| rs9468372 | TRIM27 | cis | Skin Sun Exposed Lower leg | GTEx |
| rs9468372 | RP5-874C20.3 | cis | Nerve Tibial | GTEx |
| rs9468372 | AL022393.7 | cis | Muscle Skeletal | GTEx |
| rs9468372 | AL022393.7 | cis | Artery Tibial | GTEx |
| rs9468372 | ZSCAN31 | cis | Muscle Skeletal | GTEx |
| rs9468372 | ZSCAN31 | cis | lung | GTEx |
| rs9468372 | RP5-874C20.3 | cis | Esophagus Muscularis | GTEx |
| rs9468372 | AL022393.7 | cis | Artery Aorta | GTEx |
| rs9468372 | ZSCAN31 | cis | Esophagus Muscularis | GTEx |
| rs9468372 | ZSCAN23 | cis | Artery Tibial | GTEx |
| rs9468372 | ZSCAN23 | cis | lung | GTEx |
| rs9468372 | ZSCAN23 | cis | Adipose Subcutaneous | GTEx |
| rs9468372 | AL022393.7 | cis | Nerve Tibial | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28371200-28410400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr6:28377000-28386600 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 3 | chr6:28377600-28390200 | Weak transcription | Fetal Lung | lung |
