Variant report

Variant	rs9468739
Chromosome Location	chr6:30401987-30401988
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GNL1-2	chr6:30401765-30402164	l_3159_chr6:30370222-30402164_hela

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11966607	0.81[AMR][1000 genomes]
rs11968857	0.81[AMR][1000 genomes]
rs17411284	0.83[AMR][1000 genomes]
rs28534512	0.83[AMR][1000 genomes]
rs41265603	0.81[AMR][1000 genomes]
rs57857421	0.83[AMR][1000 genomes]
rs73727373	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9261754	0.82[AMR][1000 genomes]
rs9261878	0.83[AMR][1000 genomes]
rs9261883	0.87[AMR][1000 genomes]
rs9261885	0.83[AMR][1000 genomes]
rs9261886	0.87[AMR][1000 genomes]
rs9295870	0.83[AMR][1000 genomes]
rs9295872	0.83[AMR][1000 genomes]
rs9295874	0.83[AMR][1000 genomes]
rs9295885	0.83[AMR][1000 genomes]
rs9461608	0.83[AMR][1000 genomes]
rs9461609	0.83[AMR][1000 genomes]
rs9468737	0.83[AMR][1000 genomes]
rs9468738	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468740	0.83[AMR][1000 genomes]
rs9468758	0.83[AMR][1000 genomes]
rs9468759	0.83[AMR][1000 genomes]
rs9468760	0.83[AMR][1000 genomes]
rs9468768	0.83[AMR][1000 genomes]
rs9468770	0.83[AMR][1000 genomes]
rs9468773	0.81[AMR][1000 genomes]
rs9468774	0.81[AMR][1000 genomes]
rs9501466	0.83[AMR][1000 genomes]
rs9501468	0.83[AMR][1000 genomes]
rs9501469	0.83[AMR][1000 genomes]
rs9501471	0.83[AMR][1000 genomes]
rs9885617	0.83[AMR][1000 genomes]
rs9885618	0.81[AMR][1000 genomes]
rs9885620	0.81[AMR][1000 genomes]
rs9885622	0.81[AMR][1000 genomes]
rs9885815	0.81[AMR][1000 genomes]
rs9885851	0.81[AMR][1000 genomes]
rs9918350	0.83[AMR][1000 genomes]
rs9918389	0.81[AMR][1000 genomes]
rs9918488	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv462742	chr6:30372570-30410206	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv601477	chr6:30372570-30410206	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
5	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
6	nsv601478	chr6:30383768-30438226	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv601479	chr6:30389258-30404786	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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