Variant report

Variant	rs9468741
Chromosome Location	chr6:30402163-30402164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GNL1-2	chr6:30401765-30402164	l_3159_chr6:30370222-30402164_hela

Extended variants
information (count: 168 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:161)

rs_ID	r²[population]
rs11963959	0.85[AMR][1000 genomes]
rs11966607	0.82[AMR][1000 genomes]
rs11968857	0.82[AMR][1000 genomes]
rs12180542	0.82[AMR][1000 genomes]
rs1548512	0.85[AMR][1000 genomes]
rs1548513	0.85[AMR][1000 genomes]
rs1548514	0.85[AMR][1000 genomes]
rs1548515	0.85[AMR][1000 genomes]
rs1573293	0.85[AMR][1000 genomes]
rs1573294	0.85[AMR][1000 genomes]
rs17411284	0.89[AMR][1000 genomes]
rs17411410	0.85[AMR][1000 genomes]
rs17411480	0.82[AMR][1000 genomes]
rs2023371	0.80[AMR][1000 genomes]
rs2428536	0.85[AMR][1000 genomes]
rs28534512	0.80[AMR][1000 genomes]
rs34101875	0.85[AMR][1000 genomes]
rs34163258	0.82[AMR][1000 genomes]
rs34186179	0.85[AMR][1000 genomes]
rs34335619	0.82[AMR][1000 genomes]
rs34337644	0.80[AMR][1000 genomes]
rs34340584	0.85[AMR][1000 genomes]
rs34435337	0.82[AMR][1000 genomes]
rs34551551	0.85[AMR][1000 genomes]
rs34552114	0.85[AMR][1000 genomes]
rs34708826	0.85[AMR][1000 genomes]
rs34727270	0.82[AMR][1000 genomes]
rs34762601	0.85[AMR][1000 genomes]
rs34960122	0.85[AMR][1000 genomes]
rs35227387	0.85[AMR][1000 genomes]
rs35230915	0.82[AMR][1000 genomes]
rs35235619	0.85[AMR][1000 genomes]
rs35268644	0.85[AMR][1000 genomes]
rs35328743	0.85[AMR][1000 genomes]
rs35365548	0.85[AMR][1000 genomes]
rs35407515	0.82[AMR][1000 genomes]
rs35698032	0.85[AMR][1000 genomes]
rs36034295	0.85[AMR][1000 genomes]
rs36036203	0.85[AMR][1000 genomes]
rs36093514	0.82[AMR][1000 genomes]
rs41265603	0.87[AMR][1000 genomes]
rs57857421	0.89[AMR][1000 genomes]
rs6902129	0.85[AMR][1000 genomes]
rs6902374	0.82[AMR][1000 genomes]
rs6902702	0.80[AMR][1000 genomes]
rs6902914	0.82[AMR][1000 genomes]
rs6924512	0.85[AMR][1000 genomes]
rs73727373	0.85[AMR][1000 genomes]
rs73727374	0.85[AMR][1000 genomes]
rs9261746	0.80[AMR][1000 genomes]
rs9261748	0.80[AMR][1000 genomes]
rs9261754	0.80[AMR][1000 genomes]
rs9261755	0.85[AMR][1000 genomes]
rs9261756	0.80[AMR][1000 genomes]
rs9261757	0.85[AMR][1000 genomes]
rs9261758	0.82[AMR][1000 genomes]
rs9261759	0.85[AMR][1000 genomes]
rs9261760	0.85[AMR][1000 genomes]
rs9261761	0.85[AMR][1000 genomes]
rs9261762	0.85[AMR][1000 genomes]
rs9261764	0.82[AMR][1000 genomes]
rs9261765	0.85[AMR][1000 genomes]
rs9261766	0.85[AMR][1000 genomes]
rs9261767	0.85[AMR][1000 genomes]
rs9261768	0.85[AMR][1000 genomes]
rs9261769	0.85[AMR][1000 genomes]
rs9261770	0.85[AMR][1000 genomes]
rs9261771	0.85[AMR][1000 genomes]
rs9261772	0.85[AMR][1000 genomes]
rs9261773	0.85[AMR][1000 genomes]
rs9261776	0.82[AMR][1000 genomes]
rs9261777	0.82[AMR][1000 genomes]
rs9261778	0.82[AMR][1000 genomes]
rs9261779	0.85[AMR][1000 genomes]
rs9261780	0.85[AMR][1000 genomes]
rs9261781	0.85[AMR][1000 genomes]
rs9261783	0.85[AMR][1000 genomes]
rs9261784	0.85[AMR][1000 genomes]
rs9261817	0.85[AMR][1000 genomes]
rs9261821	0.85[AMR][1000 genomes]
rs9261825	0.85[AMR][1000 genomes]
rs9261826	0.85[AMR][1000 genomes]
rs9261827	0.85[AMR][1000 genomes]
rs9261828	0.85[AMR][1000 genomes]
rs9261833	0.85[AMR][1000 genomes]
rs9261834	0.82[AMR][1000 genomes]
rs9261846	0.85[AMR][1000 genomes]
rs9261849	0.85[AMR][1000 genomes]
rs9261850	0.85[AMR][1000 genomes]
rs9261853	0.85[AMR][1000 genomes]
rs9261854	0.85[AMR][1000 genomes]
rs9261855	0.85[AMR][1000 genomes]
rs9261856	0.85[AMR][1000 genomes]
rs9261857	0.85[AMR][1000 genomes]
rs9261858	0.85[AMR][1000 genomes]
rs9261859	0.85[AMR][1000 genomes]
rs9261860	0.85[AMR][1000 genomes]
rs9261861	0.85[AMR][1000 genomes]
rs9261862	0.85[AMR][1000 genomes]
rs9261863	0.85[AMR][1000 genomes]
rs9261866	0.85[AMR][1000 genomes]
rs9261867	0.85[AMR][1000 genomes]
rs9261869	0.82[AMR][1000 genomes]
rs9261871	0.85[AMR][1000 genomes]
rs9261872	0.85[AMR][1000 genomes]
rs9261873	0.85[AMR][1000 genomes]
rs9261874	0.85[AMR][1000 genomes]
rs9261875	0.85[AMR][1000 genomes]
rs9261878	0.80[AMR][1000 genomes]
rs9261884	0.85[AMR][1000 genomes]
rs9261885	0.80[AMR][1000 genomes]
rs9261890	0.85[AMR][1000 genomes]
rs9261891	0.85[AMR][1000 genomes]
rs9261892	0.85[AMR][1000 genomes]
rs9261894	0.85[AMR][1000 genomes]
rs9261895	0.85[AMR][1000 genomes]
rs9295870	0.89[AMR][1000 genomes]
rs9295872	0.89[AMR][1000 genomes]
rs9295874	0.89[AMR][1000 genomes]
rs9295885	0.89[AMR][1000 genomes]
rs9295887	0.85[AMR][1000 genomes]
rs9295888	0.85[AMR][1000 genomes]
rs9295889	0.85[AMR][1000 genomes]
rs9295890	0.85[AMR][1000 genomes]
rs9295891	0.82[AMR][1000 genomes]
rs9295892	0.82[AMR][1000 genomes]
rs9295893	0.85[AMR][1000 genomes]
rs9295894	0.85[AMR][1000 genomes]
rs9461608	0.89[AMR][1000 genomes]
rs9461609	0.89[AMR][1000 genomes]
rs9461611	0.85[AMR][1000 genomes]
rs9468737	0.89[AMR][1000 genomes]
rs9468740	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9468758	0.89[AMR][1000 genomes]
rs9468759	0.89[AMR][1000 genomes]
rs9468760	0.89[AMR][1000 genomes]
rs9468768	0.89[AMR][1000 genomes]
rs9468770	0.85[AMR][1000 genomes]
rs9468773	0.87[AMR][1000 genomes]
rs9468774	0.87[AMR][1000 genomes]
rs9468776	0.82[AMR][1000 genomes]
rs9501020	0.82[AMR][1000 genomes]
rs9501328	0.85[AMR][1000 genomes]
rs9501329	0.85[AMR][1000 genomes]
rs9501335	0.85[AMR][1000 genomes]
rs9501336	0.85[AMR][1000 genomes]
rs9501466	0.89[AMR][1000 genomes]
rs9501468	0.89[AMR][1000 genomes]
rs9501469	0.89[AMR][1000 genomes]
rs9501471	0.89[AMR][1000 genomes]
rs9501474	0.85[AMR][1000 genomes]
rs9885617	0.89[AMR][1000 genomes]
rs9885618	0.87[AMR][1000 genomes]
rs9885620	0.87[AMR][1000 genomes]
rs9885622	0.87[AMR][1000 genomes]
rs9885685	0.85[AMR][1000 genomes]
rs9885815	0.87[AMR][1000 genomes]
rs9885851	0.82[AMR][1000 genomes]
rs9918350	0.89[AMR][1000 genomes]
rs9918389	0.87[AMR][1000 genomes]
rs9918488	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025667	chr6:30292845-30638066	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	825 gene(s)	inside rSNPs	diseases
2	nsv462742	chr6:30372570-30410206	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv601477	chr6:30372570-30410206	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
5	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
6	nsv601478	chr6:30383768-30438226	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv601479	chr6:30389258-30404786	Inactive region	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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