Variant report

Variant	rs9468818
Chromosome Location	chr6:11297104-11297105
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11290862..11293594-chr6:11296720..11298470,2	MCF-7	breast:
2	chr6:11294505..11297284-chr6:11301885..11303392,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs9461772	1.00[AMR][1000 genomes]
rs9469100	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11278600-11299000	Weak transcription	Pancreas	Pancrea
2	chr6:11279000-11305000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:11286600-11300200	Strong transcription	Primary B cells from peripheral blood	blood
4	chr6:11287400-11298000	Strong transcription	Primary T cells from cord blood	blood
5	chr6:11289000-11299400	Weak transcription	Gastric	stomach
6	chr6:11290600-11299800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:11292600-11305600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:11293000-11297400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:11293000-11298400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:11293000-11299800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:11293200-11299200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:11293200-11299200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:11293200-11305200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:11293200-11307600	Weak transcription	Placenta	Placenta
15	chr6:11294000-11298000	ZNF genes & repeats	GM12878-XiMat	blood
16	chr6:11295000-11297200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:11295000-11298000	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:11295000-11299000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr6:11295200-11299200	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr6:11295600-11298400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:11296000-11297800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr6:11296200-11297400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:11296400-11297400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:11296400-11299000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr6:11296400-11310200	Weak transcription	Spleen	Spleen
26	chr6:11296400-11310400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:11296600-11297600	Enhancers	HepG2	liver
28	chr6:11296600-11299000	Weak transcription	Lung	lung
29	chr6:11296600-11299200	Weak transcription	Thymus	Thymus
30	chr6:11296600-11299600	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr6:11296800-11297400	ZNF genes & repeats	Fetal Thymus	thymus
32	chr6:11296800-11297600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr6:11296800-11305000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr6:11297000-11297600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
35	chr6:11297000-11297800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:11297000-11298000	Enhancers	Fetal Intestine Large	intestine
37	chr6:11297000-11298000	Enhancers	Stomach Mucosa	stomach
38	chr6:11297000-11298200	Enhancers	Fetal Intestine Small	intestine
39	chr6:11297000-11300200	Strong transcription	Primary B cells from cord blood	blood
40	chr6:11297000-11310200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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