Variant report

Variant	rs9469018
Chromosome Location	chr6:11374555-11374556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11371466..11375840-chr6:11379276..11384937,6	MCF-7	breast:
2	chr6:11357315..11359191-chr6:11373053..11375273,2	K562	blood:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4495265	1.00[AMR][1000 genomes]
rs9368707	1.00[AMR][1000 genomes]
rs9469023	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11364600-11381200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:11365600-11374800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:11368400-11374600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:11368800-11376800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:11369000-11380200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr6:11369200-11374600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:11371200-11374600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:11371200-11374600	Weak transcription	Gastric	stomach
9	chr6:11371200-11375800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:11371200-11376600	Weak transcription	Adipose Nuclei	Adipose
11	chr6:11371200-11377000	Weak transcription	Lung	lung
12	chr6:11371200-11378400	Weak transcription	Fetal Thymus	thymus
13	chr6:11371200-11380200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:11371400-11376800	Weak transcription	Placenta	Placenta
15	chr6:11371400-11377000	Weak transcription	Spleen	Spleen
16	chr6:11372600-11375200	Enhancers	Primary B cells from peripheral blood	blood
17	chr6:11372800-11376000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr6:11373000-11376000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr6:11373200-11376000	Flanking Active TSS	GM12878-XiMat	blood
20	chr6:11373600-11374600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:11373600-11375400	Enhancers	HepG2	liver
22	chr6:11373800-11374600	Enhancers	Primary T cells from cord blood	blood
23	chr6:11373800-11374600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:11373800-11374800	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr6:11374000-11374800	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr6:11374000-11375200	Enhancers	Primary T cells fromperipheralblood	blood
27	chr6:11374000-11376000	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr6:11374000-11376200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:11374000-11377600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:11374000-11381200	Weak transcription	Dnd41	blood
31	chr6:11374200-11377400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr6:11374400-11374600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr6:11374400-11374600	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr6:11374400-11374600	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr6:11374400-11374800	Enhancers	Primary B cells from cord blood	blood
36	chr6:11374400-11374800	Enhancers	Left Ventricle	heart
37	chr6:11374400-11374800	Enhancers	Small Intestine	intestine
38	chr6:11374400-11374800	Enhancers	Stomach Mucosa	stomach
39	chr6:11374400-11374800	Genic enhancers	Thymus	Thymus
40	chr6:11374400-11375400	Enhancers	Colonic Mucosa	Colon
41	chr6:11374400-11375600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:11374400-11375800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr6:11374400-11376600	Enhancers	Primary T helper naive cells from peripheral blood	blood

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