Variant report

Variant	rs9469044
Chromosome Location	chr6:11399080-11399081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11396064..11399493-chr6:11408571..11410714,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4711275	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4711276	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4713483	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4713486	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4713487	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6916980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs738271	0.80[CHB][hapmap]
rs7741863	0.88[CEU][hapmap];0.80[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7750329	0.80[CHB][hapmap]
rs7754647	0.87[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7775262	0.80[CHB][hapmap]
rs9469022	0.88[CEU][hapmap];0.80[CHB][hapmap];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11394000-11405600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:11394800-11403600	Weak transcription	Primary B cells from cord blood	blood
3	chr6:11397400-11400200	Enhancers	Fetal Intestine Large	intestine
4	chr6:11397600-11400000	Enhancers	Fetal Intestine Small	intestine
5	chr6:11397800-11399600	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr6:11397800-11400000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:11398000-11399200	Enhancers	Liver	Liver
8	chr6:11398000-11399400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:11398400-11402800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:11398600-11399200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:11398600-11399200	Enhancers	A549	lung
12	chr6:11398600-11399400	Flanking Active TSS	HepG2	liver
13	chr6:11398600-11400400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:11398800-11399200	Enhancers	Fetal Lung	lung
15	chr6:11398800-11399400	Weak transcription	Lung	lung
16	chr6:11398800-11399600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:11398800-11399800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:11398800-11403400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:11398800-11405200	Weak transcription	Spleen	Spleen
20	chr6:11399000-11399400	Weak transcription	Fetal Kidney	kidney
21	chr6:11399000-11403600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:11399000-11410800	Weak transcription	Adipose Nuclei	Adipose

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