Variant report

Variant	rs9469217
Chromosome Location	chr6:11486699-11486700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10456073	0.89[JPT][hapmap]
rs10498678	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947305	0.91[JPT][hapmap]
rs10947330	0.81[ASN][1000 genomes]
rs10947356	1.00[JPT][hapmap]
rs10947357	0.90[JPT][hapmap]
rs10947360	0.88[JPT][hapmap]
rs10947419	0.91[JPT][hapmap]
rs12189605	1.00[JPT][hapmap]
rs12190208	0.91[JPT][hapmap]
rs12192607	0.90[JPT][hapmap]
rs12194504	0.88[JPT][hapmap]
rs12201652	0.81[ASN][1000 genomes]
rs12207526	0.91[JPT][hapmap]
rs12210076	0.91[JPT][hapmap]
rs12211930	0.91[JPT][hapmap]
rs12212790	0.90[JPT][hapmap]
rs12526369	0.81[ASN][1000 genomes]
rs16868542	0.91[JPT][hapmap]
rs16868544	0.91[JPT][hapmap]
rs16871460	0.91[JPT][hapmap]
rs16871482	0.89[JPT][hapmap]
rs16871484	0.91[JPT][hapmap]
rs17697397	0.91[JPT][hapmap]
rs489364	0.91[JPT][hapmap]
rs566535	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs566568	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59525038	0.80[ASN][1000 genomes]
rs673633	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs821543	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9469105	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11480200-11491200	Weak transcription	Fetal Kidney	kidney
2	chr6:11483800-11486800	Weak transcription	Lung	lung
3	chr6:11483800-11495000	Weak transcription	Pancreas	Pancrea
4	chr6:11484800-11486800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:11484800-11486800	Enhancers	Brain Substantia Nigra	brain
6	chr6:11485000-11486800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:11485400-11486800	Enhancers	Brain Germinal Matrix	brain
8	chr6:11485400-11486800	Enhancers	Brain Hippocampus Middle	brain
9	chr6:11485400-11487000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:11485400-11487400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:11485400-11488200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:11485600-11486800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:11485600-11488000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:11485800-11486800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:11485800-11486800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr6:11485800-11487000	Enhancers	Ovary	ovary
17	chr6:11486000-11487000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:11486200-11486800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:11486400-11487000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:11486400-11487000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr6:11486400-11487000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:11486400-11487000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:11486600-11488000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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