Variant report

Variant	rs9469485
Chromosome Location	chr6:33514093-33514094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10807126	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11968218	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12206050	1.00[CHB][hapmap]
rs12214883	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs210157	0.90[ASN][1000 genomes]
rs3846855	1.00[CHB][hapmap]
rs5745568	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs5745582	0.93[CHB][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs5745587	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6914422	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6918046	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9296095	1.00[CHB][hapmap];0.95[YRI][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9357161	0.84[ASN][1000 genomes]
rs9366824	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9380365	0.94[CHB][hapmap]
rs9380371	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv2763548	chr6:33496201-33524779	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9469485	BAK1	cis	Whole Blood	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33511200-33515400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:33512000-33516000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:33513200-33515800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:33514000-33514400	Flanking Active TSS	K562	blood
5	chr6:33514000-33519800	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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