Variant report

Variant	rs9469705
Chromosome Location	chr6:11625711-11625712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6935938	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469728	0.90[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9469705	PIP5K1P1	cis	parietal	SCAN
rs9469705	C6orf218	cis	cerebellum	SCAN
rs9469705	EDN1	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11610200-11631400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:11618800-11627200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:11623600-11632600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:11625200-11625800	ZNF genes & repeats	HSMMtube	muscle
5	chr6:11625200-11626000	ZNF genes & repeats	HSMM	muscle
6	chr6:11625400-11625800	Enhancers	NH-A	brain
7	chr6:11625400-11626200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:11625600-11625800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:11625600-11626200	Enhancers	Adipose Nuclei	Adipose
10	chr6:11625600-11626200	Enhancers	Fetal Muscle Leg	muscle
11	chr6:11625600-11626400	Enhancers	Aorta	Aorta
12	chr6:11625600-11626400	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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