Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1340698	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1340700	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16888692	1.00[CEU][hapmap]
rs1772256	1.00[CEU][hapmap]
rs73394022	0.83[EUR][1000 genomes]
rs73394040	0.83[EUR][1000 genomes]
rs73394048	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73394067	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73394073	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7751846	1.00[CEU][hapmap]
rs7752186	1.00[CEU][hapmap]
rs7752603	1.00[CEU][hapmap]
rs7757601	1.00[CEU][hapmap]
rs7768124	1.00[CEU][hapmap]
rs7772115	1.00[CEU][hapmap]
rs7772540	1.00[CEU][hapmap]
rs793656	1.00[CEU][hapmap]
rs9460989	0.83[EUR][1000 genomes]
rs9467136	1.00[CEU][hapmap]
rs9467151	1.00[CEU][hapmap]
rs9467152	1.00[CEU][hapmap]
rs9467154	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427746	chr6:24221299-24305709	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24232000-24263000	Weak transcription	Fetal Intestine Small	intestine
2	chr6:24243800-24270000	Weak transcription	Fetal Kidney	kidney
3	chr6:24252400-24261600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:24253200-24257400	Weak transcription	HepG2	liver

Quick Search: