Variant report

Variant	rs9470079
Chromosome Location	chr6:35643063-35643064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10947562	0.95[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];0.85[ASN][1000 genomes]
rs10947564	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9380524	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.83[ASN][1000 genomes]
rs9470069	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv885801	chr6:35537406-35671651	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv5258	chr6:35601724-35658344	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
7	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	esv1801712	chr6:35614026-35646435	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
9	nsv508403	chr6:35619045-35643768	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	esv1809645	chr6:35619554-35646435	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
11	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
12	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
13	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	esv1796766	chr6:35626500-35646435	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
15	esv1797015	chr6:35626500-35646435	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
16	esv1811106	chr6:35626500-35646435	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
17	esv1848709	chr6:35626500-35655890	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	8 gene(s)	inside rSNPs	diseases
18	esv1851034	chr6:35626500-35656400	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
19	esv1840748	chr6:35629669-35656400	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
20	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9470079	GLP1R	cis	cerebellum	SCAN
rs9470079	MDGA1	cis	cerebellum	SCAN

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35631200-35655000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:35631400-35654400	Weak transcription	Aorta	Aorta
3	chr6:35631600-35644600	Weak transcription	Small Intestine	intestine
4	chr6:35631600-35646600	Weak transcription	Gastric	stomach
5	chr6:35631600-35652000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:35632000-35643600	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:35632400-35643600	Weak transcription	Brain Anterior Caudate	brain
8	chr6:35633000-35648000	Weak transcription	Right Ventricle	heart
9	chr6:35633000-35653600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:35633600-35645200	Weak transcription	Pancreas	Pancrea
11	chr6:35635000-35655000	Weak transcription	Fetal Intestine Small	intestine
12	chr6:35636200-35644600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:35636200-35650800	Weak transcription	Lung	lung
14	chr6:35637400-35643400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:35637400-35645200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:35637400-35645200	Weak transcription	Fetal Heart	heart
17	chr6:35637400-35646600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:35637600-35654400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:35637800-35643400	Weak transcription	HSMMtube	muscle
20	chr6:35637800-35643600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:35637800-35643600	Weak transcription	Adipose Nuclei	Adipose
22	chr6:35637800-35643600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:35637800-35643800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:35637800-35644400	Weak transcription	Osteobl	bone
25	chr6:35637800-35645200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:35637800-35645200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:35637800-35645200	Weak transcription	HSMM	muscle
28	chr6:35637800-35645400	Weak transcription	Liver	Liver
29	chr6:35637800-35645400	Weak transcription	HMEC	breast
30	chr6:35637800-35645600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:35637800-35653400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:35637800-35654400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr6:35637800-35655200	Weak transcription	Fetal Stomach	stomach
34	chr6:35638000-35654400	Weak transcription	Primary hematopoietic stem cells	blood
35	chr6:35638200-35654400	Weak transcription	Primary B cells from cord blood	blood
36	chr6:35638400-35645200	Weak transcription	NHEK	skin
37	chr6:35639000-35645200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:35639000-35645200	Weak transcription	Left Ventricle	heart
39	chr6:35639400-35645200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:35640400-35647200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:35640800-35645800	Genic enhancers	Muscle Satellite Cultured Cells	--
42	chr6:35640800-35646800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr6:35641000-35643800	Enhancers	Primary T cells fromperipheralblood	blood
44	chr6:35641000-35646000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr6:35641000-35646600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:35641000-35646600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr6:35641400-35643200	Enhancers	Primary T cells from cord blood	blood
48	chr6:35641400-35655000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr6:35641600-35643600	Enhancers	Ovary	ovary
50	chr6:35641600-35646400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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